Functional Clusters   top

Cluster information

Cluster identifier
CH_ath_49
Species
Arabidopsis thaliana
Chromosome
Chr1
E-value
0.00000000016706
Data type
GO
Data identifier
GO:0006636
Data description
unsaturated fatty acid biosynthetic process

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM04M007140289612

Gene information

In cluster Gene id Description Gene type Gene family
V AT1G06080delta 9 desaturase 1 (ADS1)%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: 16:0delta9 desaturase 2 (TAIR:AT2G31360.1)%3B Has 3455 Blast hits to 3455 proteins in 832 species: Archae - 0%3B Bacteria - 1551%3B Metazoa - 796%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 764 (source: NCBI BLink).Coding geneHOM04M007140 ORTHO04M009372
V AT1G06090Fatty acid desaturase family proteinCoding geneHOM04M007140 ORTHO04M009372
X AT1TE06060No description available.Transposon
V AT1G06100Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06090.1)%3B Has 3412 Blast hits to 3412 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 796%3B Fungi - 236%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 738 (source: NCBI BLink).Coding geneHOM04M007140 ORTHO04M009372
X AT1G06110SKP1/ASK-interacting protein 16Coding geneHOM04M004848 ORTHO04M006106
V AT1G06120Fatty acid desaturase family proteinCoding geneHOM04M007140 ORTHO04M009372
X AT1G06130glyoxalase 2-4Coding geneHOM04M002103 ORTHO04M005655
X AT1G06135transmembrane proteinCoding geneHOM04M015247 orphan gene
X AT1G06137transmembrane proteinCoding geneHOM04M015247 orphan gene
X AT1G06140Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1)%3B Has 38916 Blast hits to 13813 proteins in 232 species: Archae - 0%3B Bacteria - 13%3B Metazoa - 106%3B Fungi - 93%3B Plants - 38173%3B Viruses - 0%3B Other Eukaryotes - 531 (source: NCBI BLink).Coding geneHOM04M000001 ORTHO04M000001
X AT1G06143basic helix loop helix DNA-binding superfamily proteinCoding geneHOM04M000001 ORTHO04M000001
X AT1G06150basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1).Coding geneHOM04M001014 ORTHO04M009166
X AT1G06148hypothetical proteinCoding geneHOM04M017097 orphan gene
X AT1TE06140No description available.Transposon
X AT1G06160octadecanoid-responsive AP2/ERF 59Coding geneHOM04M000008 ORTHO04M000003
X AT1G06170basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1)%3B Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4%3B Fungi - 0%3B Plants - 1252%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink).Coding geneHOM04M002134 ORTHO04M002378
X AT1G04447No description available.RNA gene
X AT1G06180myb domain protein 13 (MYB13)%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%2C Myb transcription factor (InterPro:IPR015495)%3B BEST Arabidopsis thaliana protein match is: myb domain protein 14 (TAIR:AT2G31180.1)%3B Has 8947 Blast hits to 8242 proteins in 510 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 809%3B Fungi - 464%3B Plants - 5950%3B Viruses - 6%3B Other Eukaryotes - 1718 (source: NCBI BLink).Coding geneHOM04M000010 ORTHO04M000002
X AT1G06190Rho termination factor%3B FUNCTIONS IN: transcription termination factor activity%2C ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism%2C ATP binding%3B INVOLVED IN: transcription termination%2C ATP biosynthetic process%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rho termination factor%2C N-terminal (InterPro:IPR011112)%2C ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757)%3B BEST Arabidopsis thaliana protein match is: ATP binding%3BATPases%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (TAIR:AT2G31150.1)%3B Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6%3B Bacteria - 275%3B Metazoa - 547%3B Fungi - 247%3B Plants - 133%3B Viruses - 50%3B Other Eukaryotes - 630 (source: NCBI BLink).Coding geneHOM04M005942 ORTHO04M007659
X AT1G06200Peptidase S24/S26A/S26B/S26C family proteinCoding geneHOM04M004666 ORTHO04M005536
X AT1G06210ENTH/VHS/GAT family proteinCoding geneHOM04M000377 ORTHO04M000321
X AT1TE06220No description available.Transposon
X AT1G06220MATERNAL EFFECT EMBRYO ARREST 5 (MEE5)%3B FUNCTIONS IN: translation factor activity%2C nucleic acid binding%2C GTP binding%2C translation elongation factor activity%2C GTPase activity%3B INVOLVED IN: regulation of embryo sac egg cell differentiation%2C embryo development ending in seed dormancy%3B LOCATED IN: nuclear speck%2C cell wall%2C plasma membrane%3B EXPRESSED IN: whole plant%2C cultured cell%3B CONTAINS InterPro DOMAIN/s: Protein synthesis factor%2C GTP-binding (InterPro:IPR000795)%2C Translation elongation factor EFG/EF2%2C domain IV (InterPro:IPR005517)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Translation elongation factor EFG/EF2%2C C-terminal (InterPro:IPR000640)%2C Translation elongation factor EFTu/EF1A%2C domain 2 (InterPro:IPR004161)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%2C Elongation factor G/III/V (InterPro:IPR009022)%2C Translation elongation/initiation factor/Ribosomal%2C beta-barrel (InterPro:IPR009000)%3B BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1)%3B Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314%3B Bacteria - 38464%3B Metazoa - 2393%3B Fungi - 1714%3B Plants - 1333%3B Viruses - 1%3B Other Eukaryotes - 15800 (source: NCBI BLink).Coding geneHOM04M000561 ORTHO04M005744
X AT1G06225CLAVATA3/ESR-RELATED 3Coding geneHOM04M011863 ORTHO04M014805
X AT1G06230global transcription factor group E4 (GTE4)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: DNA mediated transformation%2C cell cycle%2C root development%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487)%3B BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1).Coding geneHOM04M000325 ORTHO04M000510
X AT1G06240Protein of unknown function DUF455%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1)%3B Has 954 Blast hits to 954 proteins in 412 species: Archae - 0%3B Bacteria - 697%3B Metazoa - 13%3B Fungi - 46%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 123 (source: NCBI BLink).Coding geneHOM04M002284 ORTHO04M006861
X AT1G06250alpha/beta-Hydrolases superfamily protein%3B FUNCTIONS IN: triglyceride lipase activity%3B INVOLVED IN: lipid metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 4 anthesis%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Lipase%2C class 3 (InterPro:IPR002921)%3B BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31100.1)%3B Has 1168 Blast hits to 1158 proteins in 211 species: Archae - 0%3B Bacteria - 223%3B Metazoa - 26%3B Fungi - 117%3B Plants - 633%3B Viruses - 4%3B Other Eukaryotes - 165 (source: NCBI BLink).Coding geneHOM04M000176 ORTHO04M000116
X AT1G06265Natural antisense transcript overlaps with AT1G06260RNA gene
X AT1G06260Cysteine proteinases superfamily proteinCoding geneHOM04M000067 ORTHO04M000038
X AT1G06270Pentatricopeptide repeat (PPR) superfamily proteinCoding geneHOM04M010112 ORTHO04M012019
X AT1G06280LOB domain-containing protein 2 (LBD2)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Lateral organ boundaries%2C LOB (InterPro:IPR004883)%3B BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT1G65620.4)%3B Has 899 Blast hits to 894 proteins in 25 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 888%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink).Coding geneHOM04M000094 ORTHO04M009689
X AT1G06290acyl-CoA oxidase 3 (ACX3)%3B FUNCTIONS IN: acyl-CoA oxidase activity%3B INVOLVED IN: medium-chain fatty acid metabolic process%2C fatty acid beta-oxidation%3B LOCATED IN: peroxisome%3B EXPRESSED IN: male gametophyte%2C guard cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase%2C type1/2%2C C-terminal (InterPro:IPR013764)%2C Acyl-CoA oxidase/dehydrogenase%2C type 1 (InterPro:IPR006090)%2C Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100)%2C Acyl-CoA oxidase (InterPro:IPR012258)%2C Acyl-CoA oxidase/dehydrogenase%2C central domain (InterPro:IPR006091)%2C Acyl-CoA oxidase%2C C-terminal (InterPro:IPR002655)%2C Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075)%3B BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 6 (TAIR:AT1G06310.1)%3B Has 12520 Blast hits to 12510 proteins in 1399 species: Archae - 229%3B Bacteria - 8347%3B Metazoa - 1502%3B Fungi - 589%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 1556 (source: NCBI BLink).Coding geneHOM04M000965 ORTHO04M007531
X AT1G06310acyl-CoA oxidase 6 (ACX6)%3B FUNCTIONS IN: acyl-CoA dehydrogenase activity%2C oxidoreductase activity%2C acting on the CH-CH group of donors%2C oxidoreductase activity%2C FAD binding%2C acyl-CoA oxidase activity%3B INVOLVED IN: oxidation reduction%2C fatty acid beta-oxidation%2C fatty acid metabolic process%2C metabolic process%3B LOCATED IN: peroxisome%3B EXPRESSED IN: root%3B CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase%2C type1/2%2C C-terminal (InterPro:IPR013764)%2C Acyl-CoA oxidase/dehydrogenase%2C type 1 (InterPro:IPR006090)%2C Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100)%2C Acyl-CoA oxidase (InterPro:IPR012258)%2C Acyl-CoA dehydrogenase/oxidase%2C N-terminal (InterPro:IPR013786)%2C Acyl-CoA oxidase/dehydrogenase%2C central domain (InterPro:IPR006091)%2C Acyl-CoA oxidase%2C C-terminal (InterPro:IPR002655)%2C Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075)%3B BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 3 (TAIR:AT1G06290.1)%3B Has 11223 Blast hits to 11219 proteins in 1363 species: Archae - 224%3B Bacteria - 7535%3B Metazoa - 1409%3B Fungi - 559%3B Plants - 271%3B Viruses - 0%3B Other Eukaryotes - 1225 (source: NCBI BLink).Coding geneHOM04M000965 ORTHO04M007531
X AT1G06320hypothetical proteinCoding geneHOM04M007428 ORTHO04M008068
X AT1G06330Heavy metal transport/detoxification superfamily proteinCoding geneHOM04M000123 ORTHO04M002586
X AT1G06340Plant Tudor-like proteinCoding geneHOM04M002740 ORTHO04M001404
V AT1G06350Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06360.1)%3B Has 3426 Blast hits to 3426 proteins in 822 species: Archae - 0%3B Bacteria - 1532%3B Metazoa - 799%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 751 (source: NCBI BLink).Coding geneHOM04M007140 ORTHO04M009372
X AT1TE06340No description available.Transposon
X AT1TE06345No description available.Transposon
V AT1G06360Fatty acid desaturase family protein%3B FUNCTIONS IN: oxidoreductase activity%2C oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water%3B INVOLVED IN: oxidation reduction%2C lipid metabolic process%3B CONTAINS InterPro DOMAIN/s: Fatty acid desaturase%2C type 1%2C core (InterPro:IPR015876)%2C Fatty acid desaturase%2C type 1 (InterPro:IPR005804)%3B BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1)%3B Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0%3B Bacteria - 1534%3B Metazoa - 802%3B Fungi - 234%3B Plants - 106%3B Viruses - 4%3B Other Eukaryotes - 752 (source: NCBI BLink).Coding geneHOM04M007140 ORTHO04M009372