Functional clusters   top

Information

Type
InterPro domain
Identifier
IPR012951
Description
Berberine/berberine-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodaAmTr_v1.0_scaffold000325CH_atr_556220.000794407
Amborella trichopodaAmTr_v1.0_scaffold000326CH_atr_556220.000794407
Arabidopsis thalianaChr15CH_ath_1075110.00000000018815
Arabidopsis thalianaChr15CH_ath_726170.00000000000158633
Arabidopsis thalianaChr45CH_ath_95590.0000000000513419
Arabidopsis thalianaChr55CH_ath_986290.0000000000606965
Arabidopsis thalianaChr16CH_ath_726170.00000000000158633
Arabidopsis thalianaChr16CH_ath_1075110.00000000018815
Arabidopsis thalianaChr46CH_ath_95590.0000000000513419
Arabidopsis thalianaChr56CH_ath_986290.0000000000606965
Brachypodium distachyonBd15CH_bdi_234330.00000112182
Brachypodium distachyonBd55CH_bdi_4673130.000320116
Brachypodium distachyonBd16CH_bdi_234330.00000112182
Brachypodium distachyonBd56CH_bdi_4673130.000320116
Elaeis guineensisNC_025995.15CH_egu_113330.000000530047
Elaeis guineensisNC_025995.16CH_egu_113330.000000530047
Hordeum vulgare25CH_hvu_115380.000379393
Hordeum vulgare26CH_hvu_115380.000379393
Musa acuminatachr35CH_mac_127340.000000951472
Musa acuminatachr36CH_mac_127340.000000951472
Oropetium thomaeumOropetium_genomic_20141112_0395CH_oth_9570.00000000000062904
Oropetium thomaeumOropetium_genomic_20141112_0396CH_oth_9570.00000000000062904
Oryza brachyantha65CH_obr_148141.27034e-21
Oryza brachyantha66CH_obr_148141.27034e-21
Oryza sativa ssp. indicaChr65CH_osaindica_397101.42271e-19
Oryza sativa ssp. indicaChr85CH_osaindica_303330.000000880743
Oryza sativa ssp. indicaChr66CH_osaindica_397101.42271e-19
Oryza sativa ssp. indicaChr86CH_osaindica_303330.000000880743
Oryza sativa ssp. japonicaChr65CH_osa_876110.00000000000000229846
Oryza sativa ssp. japonicaChr85CH_osa_356330.000000741627
Oryza sativa ssp. japonicaChr66CH_osa_876110.00000000000000229846
Oryza sativa ssp. japonicaChr86CH_osa_356330.000000741627
Populus trichocarpaChr015CH_ptr_823601.19731e-45
Populus trichocarpaChr115CH_ptr_230411.81059e-73
Populus trichocarpaChr016CH_ptr_823601.19731e-45
Populus trichocarpaChr116CH_ptr_230411.81059e-73
Selaginella moellendorffiiscaffold_515CH_smo_1754220.0000541121
Selaginella moellendorffiiscaffold_516CH_smo_1754220.0000541121
Setaria italicascaffold_45CH_sit_88678.30946e-16
Setaria italicascaffold_46CH_sit_88678.30946e-16
Solanum lycopersicumSL2.50ch025CH_sly_129550.00000000000438558
Solanum lycopersicumSL2.50ch025CH_sly_389151.75181e-21
Solanum lycopersicumSL2.50ch105CH_sly_813380.000639294
Solanum lycopersicumSL2.50ch026CH_sly_389151.75181e-21
Solanum lycopersicumSL2.50ch026CH_sly_129550.00000000000438558
Solanum lycopersicumSL2.50ch106CH_sly_813380.000639294
Sorghum bicolorChr045CH_sbi_530370.000122716
Sorghum bicolorChr105CH_sbi_67661.936e-16
Sorghum bicolorChr046CH_sbi_530370.000122716
Sorghum bicolorChr106CH_sbi_67661.936e-16
Spirodela polyrhizapseudo325CH_spo_220220.000101921
Spirodela polyrhizapseudo326CH_spo_220220.000101921
Vitis viniferachr105CH_vvi_419212.33212e-21
Vitis viniferachr125CH_vvi_374330.00000394881
Vitis viniferachr106CH_vvi_419212.33212e-21
Vitis viniferachr126CH_vvi_374330.00000394881
Zea mays95CH_zma_214350.00000507355
Zea mays96CH_zma_214350.00000507355
Zoysia japonica ssp. nagirizakiZjn_sc00018.15CH_zjn_118330.000000451662
Zoysia japonica ssp. nagirizakiZjn_sc00018.16CH_zjn_118330.000000451662

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
2GOPrimary GO data only.230800.001V
1GOPrimary GO data only.230800.001X
4GOAll GO data.230800.001V