Functional clusters   top

Information

Type
InterPro domain
Identifier
IPR005299
Description
SAM dependent carboxyl methyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodaAmTr_v1.0_scaffold000115CH_atr_397390.000226966
Amborella trichopodaAmTr_v1.0_scaffold000585CH_atr_282340.0000108262
Amborella trichopodaAmTr_v1.0_scaffold000116CH_atr_397390.000226966
Amborella trichopodaAmTr_v1.0_scaffold000586CH_atr_282340.0000108262
Ananas comosusLG105CH_aco_2013110.000373674
Ananas comosusLG106CH_aco_2013110.000373674
Arabidopsis thalianaChr35CH_ath_408370.0000990108
Arabidopsis thalianaChr55CH_ath_5934710.000852412
Arabidopsis thalianaChr36CH_ath_408370.0000990108
Arabidopsis thalianaChr56CH_ath_5934710.000852412
Brachypodium distachyonBd45CH_bdi_350360.000037092
Brachypodium distachyonBd46CH_bdi_350360.000037092
Musa acuminatachr75CH_mac_58154.97714e-19
Musa acuminatachr76CH_mac_58154.97714e-19
Oryza brachyantha115CH_obr_616150.00000000000330883
Oryza brachyantha65CH_obr_80580.0000000000828171
Oryza brachyantha116CH_obr_616150.00000000000330883
Oryza brachyantha66CH_obr_80580.0000000000828171
Oryza sativa ssp. indicaChr115CH_osaindica_77670.0000000000000779136
Oryza sativa ssp. indicaChr45CH_osaindica_129560.0000000000891435
Oryza sativa ssp. indicaChr65CH_osaindica_2210174.72207e-23
Oryza sativa ssp. indicaChr65CH_osaindica_1436200.00000000042781
Oryza sativa ssp. indicaChr116CH_osaindica_77670.0000000000000779136
Oryza sativa ssp. indicaChr46CH_osaindica_129560.0000000000891435
Oryza sativa ssp. indicaChr66CH_osaindica_1436200.00000000042781
Oryza sativa ssp. indicaChr66CH_osaindica_2210174.72207e-23
Oryza sativa ssp. japonicaChr115CH_osa_629226.24719e-18
Oryza sativa ssp. japonicaChr45CH_osa_261440.0000000323687
Oryza sativa ssp. japonicaChr65CH_osa_3011212.47588e-24
Oryza sativa ssp. japonicaChr65CH_osa_9910640.0000000000000251202
Oryza sativa ssp. japonicaChr116CH_osa_629226.24719e-18
Oryza sativa ssp. japonicaChr46CH_osa_261440.0000000323687
Oryza sativa ssp. japonicaChr66CH_osa_9910640.0000000000000251202
Oryza sativa ssp. japonicaChr66CH_osa_3011212.47588e-24
Populus trichocarpaChr175CH_ptr_1646150.0000000000110094
Populus trichocarpaChr195CH_ptr_197570.0000000000835813
Populus trichocarpaChr176CH_ptr_1646150.0000000000110094
Populus trichocarpaChr196CH_ptr_197570.0000000000835813
Setaria italicascaffold_45CH_sit_256460.0000000269105
Setaria italicascaffold_45CH_sit_202440.0000000017953
Setaria italicascaffold_95CH_sit_420330.00000412381
Setaria italicascaffold_46CH_sit_202440.0000000017953
Setaria italicascaffold_46CH_sit_256460.0000000269105
Setaria italicascaffold_96CH_sit_420330.00000412381
Solanum lycopersicumSL2.50ch095CH_sly_435330.00000881247
Solanum lycopersicumSL2.50ch096CH_sly_435330.00000881247
Spirodela polyrhizapseudo225CH_spo_42560.000000000000271966
Spirodela polyrhizapseudo226CH_spo_42560.000000000000271966
Vitis viniferachr15CH_vvi_109660.000000000000219969
Vitis viniferachr175CH_vvi_502330.0000857455
Vitis viniferachr185CH_vvi_263440.000000120667
Vitis viniferachr35CH_vvi_500330.0000857455
Vitis viniferachr45CH_vvi_501330.0000857455
Vitis viniferachr45CH_vvi_2013157.20775e-32
Vitis viniferachr16CH_vvi_109660.000000000000219969
Vitis viniferachr176CH_vvi_502330.0000857455
Vitis viniferachr186CH_vvi_263440.000000120667
Vitis viniferachr36CH_vvi_500330.0000857455
Vitis viniferachr46CH_vvi_501330.0000857455
Vitis viniferachr46CH_vvi_2013157.20775e-32
Zea mays45CH_zma_80450.00000000253445
Zea mays55CH_zma_112470.0000000177327
Zea mays95CH_zma_190330.00000172248
Zea mays46CH_zma_80450.00000000253445
Zea mays56CH_zma_112470.0000000177327
Zea mays96CH_zma_190330.00000172248
Zoysia japonica ssp. nagirizakiZjn_sc00093.15CH_zjn_8681.31093e-16
Zoysia japonica ssp. nagirizakiZjn_sc00093.16CH_zjn_8681.31093e-16

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
2GOPrimary GO data only.230800.001V
1GOPrimary GO data only.230800.001X
4GOAll GO data.230800.001V