Functional clusters   top


GO term
regulation of primary metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodaAmTr_v1.0_scaffold000213CH_atr_22518630.000153923
Amborella trichopodaAmTr_v1.0_scaffold000214CH_atr_22518630.000153923

Available child term results

GO term Description Number of clusters
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity4
GO:0000381regulation of alternative mRNA splicing, via spliceosome2
GO:0006109regulation of carbohydrate metabolic process2
GO:0006344maintenance of chromatin silencing6
GO:0006355regulation of transcription, DNA-templated18
GO:0006357regulation of transcription from RNA polymerase II promoter4
GO:0006417regulation of translation2
GO:0006446regulation of translational initiation2
GO:0008612peptidyl-lysine modification to peptidyl-hypusine12
GO:0009963positive regulation of flavonoid biosynthetic process2
GO:0010116positive regulation of abscisic acid biosynthetic process4
GO:0010364regulation of ethylene biosynthetic process6
GO:0010373negative regulation of gibberellin biosynthetic process2
GO:0010422regulation of brassinosteroid biosynthetic process6
GO:0010513positive regulation of phosphatidylinositol biosynthetic process2
GO:0010569regulation of double-strand break repair via homologous recombination22
GO:0010581regulation of starch biosynthetic process6
GO:0010675regulation of cellular carbohydrate metabolic process2
GO:0010964regulation of chromatin silencing by small RNA12
GO:0031054pre-miRNA processing2
GO:0031396regulation of protein ubiquitination4
GO:0031399regulation of protein modification process2
GO:0031539positive regulation of anthocyanin metabolic process2
GO:0031540regulation of anthocyanin biosynthetic process4
GO:0031542positive regulation of anthocyanin biosynthetic process2
GO:0031935regulation of chromatin silencing2
GO:0031937positive regulation of chromatin silencing12
GO:0032786positive regulation of DNA-templated transcription, elongation4
GO:0032877positive regulation of DNA endoreduplication4
GO:0032951regulation of beta-glucan biosynthetic process2
GO:0032968positive regulation of transcription elongation from RNA polymerase II promoter8
GO:0033234negative regulation of protein sumoylation8
GO:0035278miRNA mediated inhibition of translation20
GO:0035281pre-miRNA export from nucleus2
GO:0042177negative regulation of protein catabolic process6
GO:0043433negative regulation of sequence-specific DNA binding transcription factor activity4
GO:0043550regulation of lipid kinase activity4
GO:0044030regulation of DNA methylation4
GO:0045128negative regulation of reciprocal meiotic recombination2
GO:0045723positive regulation of fatty acid biosynthetic process18
GO:0045739positive regulation of DNA repair2
GO:0045740positive regulation of DNA replication4
GO:0045763negative regulation of cellular amino acid metabolic process2
GO:0045892negative regulation of transcription, DNA-templated2
GO:0045910negative regulation of DNA recombination22
GO:0045944positive regulation of transcription from RNA polymerase II promoter2
GO:0046889positive regulation of lipid biosynthetic process2
GO:0050732negative regulation of peptidyl-tyrosine phosphorylation2
GO:0051052regulation of DNA metabolic process2
GO:0051090regulation of sequence-specific DNA binding transcription factor activity2
GO:0051252regulation of RNA metabolic process2
GO:0051573negative regulation of histone H3-K9 methylation2
GO:0051973positive regulation of telomerase activity2
GO:0060211regulation of nuclear-transcribed mRNA poly(A) tail shortening2
GO:0061014positive regulation of mRNA catabolic process2
GO:00611583'-UTR-mediated mRNA destabilization2
GO:0070921regulation of production of siRNA involved in chromatin silencing by small RNA14
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain2
GO:0071900regulation of protein serine/threonine kinase activity2
GO:0080149sucrose induced translational repression24
GO:0090065regulation of production of siRNA involved in RNA interference6
GO:0090359negative regulation of abscisic acid biosynthetic process6
GO:1900109regulation of histone H3-K9 dimethylation2
GO:1900384regulation of flavonol biosynthetic process26
GO:1900386positive regulation of flavonol biosynthetic process2
GO:1901918negative regulation of exoribonuclease activity10
GO:1902066regulation of cell wall pectin metabolic process16
GO:1902464regulation of histone H3-K27 trimethylation2
GO:1903320regulation of protein modification by small protein conjugation or removal2
GO:1903578regulation of ATP metabolic process2
GO:1904666regulation of ubiquitin protein ligase activity2
GO:1904667negative regulation of ubiquitin protein ligase activity10
GO:1904668positive regulation of ubiquitin protein ligase activity6
GO:1904964positive regulation of phytol biosynthetic process2
GO:1905038regulation of membrane lipid metabolic process2
GO:1905168positive regulation of double-strand break repair via homologous recombination2
GO:1905255regulation of RNA binding transcription factor activity2
GO:2000042negative regulation of double-strand break repair via homologous recombination2
GO:2000082regulation of L-ascorbic acid biosynthetic process2
GO:2000083negative regulation of L-ascorbic acid biosynthetic process4
GO:2000117negative regulation of cysteine-type endopeptidase activity14

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
2GOPrimary GO data only.230800.001V
1GOPrimary GO data only.230800.001X
4GOAll GO data.230800.001V