PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0080090
Description: regulation of primary metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	AmTr_v1.0_scaffold00021	3	CH_atr_225	18	63	0.000153923
Amborella trichopoda	AmTr_v1.0_scaffold00021	4	CH_atr_225	18	63	0.000153923

Available child term results

GO term	Description	Number of clusters
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	4
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	2
GO:0006109	regulation of carbohydrate metabolic process	2
GO:0006344	maintenance of chromatin silencing	6
GO:0006355	regulation of transcription, DNA-templated	18
GO:0006357	regulation of transcription from RNA polymerase II promoter	4
GO:0006417	regulation of translation	2
GO:0006446	regulation of translational initiation	2
GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	12
GO:0009963	positive regulation of flavonoid biosynthetic process	2
GO:0010116	positive regulation of abscisic acid biosynthetic process	4
GO:0010364	regulation of ethylene biosynthetic process	6
GO:0010373	negative regulation of gibberellin biosynthetic process	2
GO:0010422	regulation of brassinosteroid biosynthetic process	6
GO:0010513	positive regulation of phosphatidylinositol biosynthetic process	2
GO:0010569	regulation of double-strand break repair via homologous recombination	22
GO:0010581	regulation of starch biosynthetic process	6
GO:0010675	regulation of cellular carbohydrate metabolic process	2
GO:0010964	regulation of chromatin silencing by small RNA	12
GO:0031054	pre-miRNA processing	2
GO:0031396	regulation of protein ubiquitination	4
GO:0031399	regulation of protein modification process	2
GO:0031539	positive regulation of anthocyanin metabolic process	2
GO:0031540	regulation of anthocyanin biosynthetic process	4
GO:0031542	positive regulation of anthocyanin biosynthetic process	2
GO:0031935	regulation of chromatin silencing	2
GO:0031937	positive regulation of chromatin silencing	12
GO:0032786	positive regulation of DNA-templated transcription, elongation	4
GO:0032877	positive regulation of DNA endoreduplication	4
GO:0032951	regulation of beta-glucan biosynthetic process	2
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	8
GO:0033234	negative regulation of protein sumoylation	8
GO:0035278	miRNA mediated inhibition of translation	20
GO:0035281	pre-miRNA export from nucleus	2
GO:0042177	negative regulation of protein catabolic process	6
GO:0043433	negative regulation of sequence-specific DNA binding transcription factor activity	4
GO:0043550	regulation of lipid kinase activity	4
GO:0044030	regulation of DNA methylation	4
GO:0045128	negative regulation of reciprocal meiotic recombination	2
GO:0045723	positive regulation of fatty acid biosynthetic process	18
GO:0045739	positive regulation of DNA repair	2
GO:0045740	positive regulation of DNA replication	4
GO:0045763	negative regulation of cellular amino acid metabolic process	2
GO:0045892	negative regulation of transcription, DNA-templated	2
GO:0045910	negative regulation of DNA recombination	22
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	2
GO:0046889	positive regulation of lipid biosynthetic process	2
GO:0050732	negative regulation of peptidyl-tyrosine phosphorylation	2
GO:0051052	regulation of DNA metabolic process	2
GO:0051090	regulation of sequence-specific DNA binding transcription factor activity	2
GO:0051252	regulation of RNA metabolic process	2
GO:0051573	negative regulation of histone H3-K9 methylation	2
GO:0051973	positive regulation of telomerase activity	2
GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	2
GO:0061014	positive regulation of mRNA catabolic process	2
GO:0061158	3'-UTR-mediated mRNA destabilization	2
GO:0070921	regulation of production of siRNA involved in chromatin silencing by small RNA	14
GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain	2
GO:0071900	regulation of protein serine/threonine kinase activity	2
GO:0080149	sucrose induced translational repression	24
GO:0090065	regulation of production of siRNA involved in RNA interference	6
GO:0090359	negative regulation of abscisic acid biosynthetic process	6
GO:1900109	regulation of histone H3-K9 dimethylation	2
GO:1900384	regulation of flavonol biosynthetic process	26
GO:1900386	positive regulation of flavonol biosynthetic process	2
GO:1901918	negative regulation of exoribonuclease activity	10
GO:1902066	regulation of cell wall pectin metabolic process	16
GO:1902464	regulation of histone H3-K27 trimethylation	2
GO:1903320	regulation of protein modification by small protein conjugation or removal	2
GO:1903578	regulation of ATP metabolic process	2
GO:1904666	regulation of ubiquitin protein ligase activity	2
GO:1904667	negative regulation of ubiquitin protein ligase activity	10
GO:1904668	positive regulation of ubiquitin protein ligase activity	6
GO:1904964	positive regulation of phytol biosynthetic process	2
GO:1905038	regulation of membrane lipid metabolic process	2
GO:1905168	positive regulation of double-strand break repair via homologous recombination	2
GO:1905255	regulation of RNA binding transcription factor activity	2
GO:2000042	negative regulation of double-strand break repair via homologous recombination	2
GO:2000082	regulation of L-ascorbic acid biosynthetic process	2
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	4
GO:2000117	negative regulation of cysteine-type endopeptidase activity	14

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V