PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Physcomitrella patens	Chr08	1	CH_ppa_63	7	78	0.0001027
Physcomitrella patens	Chr08	2	CH_ppa_63	7	78	0.0001027
Solanum lycopersicum	SL2.50ch02	3	CH_sly_120	7	7	0.000000000826119
Solanum lycopersicum	SL2.50ch02	4	CH_sly_120	7	7	0.000000000826119
Vitis vinifera	chr10	3	CH_vvi_324	4	4	0.000220097
Vitis vinifera	chr10	4	CH_vvi_324	4	4	0.000220097

GO term	Description	Number of clusters
GO:0009664	plant-type cell wall organization	90
GO:0009828	plant-type cell wall loosening	6
GO:0009830	cell wall modification involved in abscission	22
GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	4
GO:0010215	cellulose microfibril organization	16
GO:0010289	homogalacturonan biosynthetic process	4
GO:0052543	callose deposition in cell wall	2
GO:1902066	regulation of cell wall pectin metabolic process	16

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V