PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0032501
Description: multicellular organismal process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oropetium thomaeum	Oropetium_genomic_20141112_004	1	CH_oth_32	5	7	0.00000221838
Oropetium thomaeum	Oropetium_genomic_20141112_004	2	CH_oth_32	5	7	0.00000221838

Available child term results

GO term	Description	Number of clusters
GO:0000578	embryonic axis specification	4
GO:0003002	regionalization	2
GO:0007060	male meiosis chromosome segregation	2
GO:0007065	male meiosis sister chromatid cohesion	6
GO:0007275	multicellular organism development	28
GO:0009555	pollen development	4
GO:0009556	microsporogenesis	58
GO:0009791	post-embryonic development	4
GO:0009793	embryo development ending in seed dormancy	10
GO:0009830	cell wall modification involved in abscission	22
GO:0009836	fruit ripening, climacteric	2
GO:0009845	seed germination	2
GO:0009856	pollination	4
GO:0009875	pollen-pistil interaction	2
GO:0009901	anther dehiscence	6
GO:0009908	flower development	10
GO:0009910	negative regulation of flower development	4
GO:0009942	longitudinal axis specification	2
GO:0009955	adaxial/abaxial pattern specification	2
GO:0009960	endosperm development	6
GO:0010022	meristem determinacy	2
GO:0010029	regulation of seed germination	4
GO:0010050	vegetative phase change	2
GO:0010062	negative regulation of trichoblast fate specification	6
GO:0010071	root meristem specification	2
GO:0010081	regulation of inflorescence meristem growth	18
GO:0010150	leaf senescence	6
GO:0010152	pollen maturation	2
GO:0010154	fruit development	2
GO:0010183	pollen tube guidance	12
GO:0010187	negative regulation of seed germination	2
GO:0010197	polar nucleus fusion	6
GO:0010198	synergid death	8
GO:0010214	seed coat development	2
GO:0010223	secondary shoot formation	2
GO:0010228	vegetative to reproductive phase transition of meristem	2
GO:0010233	phloem transport	2
GO:0010235	guard mother cell cytokinesis	2
GO:0010305	leaf vascular tissue pattern formation	4
GO:0010311	lateral root formation	6
GO:0010321	regulation of vegetative phase change	2
GO:0010442	guard cell morphogenesis	2
GO:0010444	guard mother cell differentiation	2
GO:0010479	stele development	2
GO:0010483	pollen tube reception	2
GO:0010584	pollen exine formation	2
GO:0010588	cotyledon vascular tissue pattern formation	4
GO:0022619	generative cell differentiation	2
GO:0032922	circadian regulation of gene expression	4
GO:0040014	regulation of multicellular organism growth	4
GO:0042335	cuticle development	2
GO:0044706	multi-multicellular organism process	2
GO:0044707	single-multicellular organism process	8
GO:0046620	regulation of organ growth	4
GO:0046621	negative regulation of organ growth	40
GO:0046622	positive regulation of organ growth	2
GO:0048235	pollen sperm cell differentiation	8
GO:0048240	sperm capacitation	2
GO:0048281	inflorescence morphogenesis	10
GO:0048316	seed development	4
GO:0048364	root development	14
GO:0048437	floral organ development	2
GO:0048441	petal development	2
GO:0048448	stamen morphogenesis	30
GO:0048451	petal formation	12
GO:0048455	stamen formation	2
GO:0048527	lateral root development	2
GO:0048544	recognition of pollen	280
GO:0048573	photoperiodism, flowering	2
GO:0048574	long-day photoperiodism, flowering	8
GO:0048629	trichome patterning	6
GO:0048653	anther development	2
GO:0048654	anther morphogenesis	2
GO:0048655	anther wall tapetum morphogenesis	2
GO:0048658	anther wall tapetum development	4
GO:0048700	acquisition of desiccation tolerance in seed	16
GO:0048829	root cap development	4
GO:0048830	adventitious root development	2
GO:0048873	homeostasis of number of cells within a tissue	12
GO:0055046	microgametogenesis	2
GO:0060586	multicellular organismal iron ion homeostasis	4
GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	2
GO:0060862	negative regulation of floral organ abscission	10
GO:0080006	internode patterning	2
GO:0080022	primary root development	2
GO:0080050	regulation of seed development	4
GO:0080092	regulation of pollen tube growth	4
GO:0080110	sporopollenin biosynthetic process	6
GO:0080127	fruit septum development	4
GO:0080172	petal epidermis patterning	6
GO:0080173	male-female gamete recognition during double fertilization	2
GO:0080181	lateral root branching	12
GO:0090057	root radial pattern formation	2
GO:0090213	regulation of radial pattern formation	10
GO:0090408	phloem nitrate loading	2
GO:0090567	reproductive shoot system development	2
GO:0098755	maintenance of seed dormancy by absisic acid	14
GO:1900033	negative regulation of trichome patterning	4
GO:1900055	regulation of leaf senescence	2
GO:1900056	negative regulation of leaf senescence	4
GO:1901371	regulation of leaf morphogenesis	2
GO:1990064	ground tissue pattern formation	6
GO:2000025	regulation of leaf formation	2
GO:2000028	regulation of photoperiodism, flowering	2
GO:2000032	regulation of secondary shoot formation	2
GO:2000033	regulation of seed dormancy process	16
GO:2000122	negative regulation of stomatal complex development	2
GO:2000123	positive regulation of stomatal complex development	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V