Functional clusters   top

Information

Type
GO term
Identifier
GO:0016567
Description
protein ubiquitination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodaAmTr_v1.0_scaffold001291CH_atr_69570.000000028646
Amborella trichopodaAmTr_v1.0_scaffold001292CH_atr_69570.000000028646
Arabidopsis thalianaChr41CH_ath_402440.000285993
Arabidopsis thalianaChr42CH_ath_402440.000285993
Arabidopsis thalianaChr43CH_ath_533440.000367172
Arabidopsis thalianaChr44CH_ath_533440.000367172
Brachypodium distachyonBd31CH_bdi_225330.000751822
Brachypodium distachyonBd51CH_bdi_2134100.000426994
Brachypodium distachyonBd32CH_bdi_225330.000751822
Brachypodium distachyonBd52CH_bdi_2134100.000426994
Elaeis guineensisNC_025994.11CH_egu_116490.000397084
Elaeis guineensisNC_025995.11CH_egu_144330.00096866
Elaeis guineensisNC_025994.12CH_egu_116490.000397084
Elaeis guineensisNC_025995.12CH_egu_144330.00096866
Hordeum vulgare21CH_hvu_18450.0000104298
Hordeum vulgare22CH_hvu_18450.0000104298
Hordeum vulgare23CH_hvu_51450.000327597
Hordeum vulgare24CH_hvu_51450.000327597
Oropetium thomaeumOropetium_genomic_20141112_0021CH_oth_119330.000895217
Oropetium thomaeumOropetium_genomic_20141112_0061CH_oth_120330.000895217
Oropetium thomaeumOropetium_genomic_20141112_0022CH_oth_119330.000895217
Oropetium thomaeumOropetium_genomic_20141112_0062CH_oth_120330.000895217
Oryza brachyantha111CH_obr_210330.000694548
Oryza brachyantha91CH_obr_211330.000694548
Oryza brachyantha112CH_obr_210330.000694548
Oryza brachyantha92CH_obr_211330.000694548
Oryza sativa ssp. indicaChr21CH_osaindica_290330.000729031
Oryza sativa ssp. indicaChr41CH_osaindica_135440.00000190205
Oryza sativa ssp. indicaChr91CH_osaindica_136440.00000190205
Oryza sativa ssp. indicaChr22CH_osaindica_290330.000729031
Oryza sativa ssp. indicaChr42CH_osaindica_135440.00000190205
Oryza sativa ssp. indicaChr92CH_osaindica_136440.00000190205
Oryza sativa ssp. indicaChr43CH_osaindica_260440.0000576595
Oryza sativa ssp. indicaChr93CH_osaindica_218580.0000195481
Oryza sativa ssp. indicaChr44CH_osaindica_260440.0000576595
Oryza sativa ssp. indicaChr94CH_osaindica_218580.0000195481
Oryza sativa ssp. japonicaChr41CH_osa_266450.0000601373
Oryza sativa ssp. japonicaChr91CH_osa_361470.000418216
Oryza sativa ssp. japonicaChr42CH_osa_266450.0000601373
Oryza sativa ssp. japonicaChr92CH_osa_361470.000418216
Oryza sativa ssp. japonicaChr43CH_osa_508450.000770604
Oryza sativa ssp. japonicaChr93CH_osa_5195120.000907185
Oryza sativa ssp. japonicaChr44CH_osa_508450.000770604
Oryza sativa ssp. japonicaChr94CH_osa_5195120.000907185
Phalaenopsis equestrisScaffold0013073CH_peq_66440.000053637
Phalaenopsis equestrisScaffold0013074CH_peq_66440.000053637
Setaria italicascaffold_71CH_sit_219460.0000505543
Setaria italicascaffold_72CH_sit_219460.0000505543
Solanum lycopersicumSL2.50ch011CH_sly_135560.0000000391379
Solanum lycopersicumSL2.50ch011CH_sly_392330.000829248
Solanum lycopersicumSL2.50ch012CH_sly_135560.0000000391379
Solanum lycopersicumSL2.50ch012CH_sly_392330.000829248
Sorghum bicolorChr051CH_sbi_147440.00000324683
Sorghum bicolorChr061CH_sbi_197460.0000484622
Sorghum bicolorChr052CH_sbi_147440.00000324683
Sorghum bicolorChr062CH_sbi_197460.0000484622
Sorghum bicolorChr053CH_sbi_304440.000105899
Sorghum bicolorChr054CH_sbi_304440.000105899

Available child term results

GO term Description Number of clusters
GO:0000209protein polyubiquitination4
GO:0031396regulation of protein ubiquitination4
GO:1904666regulation of ubiquitin protein ligase activity2
GO:1904667negative regulation of ubiquitin protein ligase activity10
GO:1904668positive regulation of ubiquitin protein ligase activity6

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
2GOPrimary GO data only.230800.001V
1GOPrimary GO data only.230800.001X
4GOAll GO data.230800.001V