PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	Chr2	1	CH_ath_453	3	9	0.000534696
Arabidopsis thaliana	Chr2	2	CH_ath_453	3	9	0.000534696
Arabidopsis thaliana	Chr2	3	CH_ath_582	3	9	0.000628837
Arabidopsis thaliana	Chr2	4	CH_ath_582	3	9	0.000628837
Marchantia polymorpha	scaffold_126	1	CH_mpo_51	5	24	0.00000660772
Marchantia polymorpha	scaffold_54	1	CH_mpo_7	8	11	6.0833e-17
Marchantia polymorpha	scaffold_6	1	CH_mpo_11	6	6	0.000000000000219645
Marchantia polymorpha	scaffold_126	2	CH_mpo_51	5	24	0.00000660772
Marchantia polymorpha	scaffold_54	2	CH_mpo_7	8	11	6.0833e-17
Marchantia polymorpha	scaffold_6	2	CH_mpo_11	6	6	0.000000000000219645
Oryza sativa ssp. japonica	Chr4	1	CH_osa_279	3	7	0.0000961649
Oryza sativa ssp. japonica	Chr4	2	CH_osa_279	3	7	0.0000961649
Phalaenopsis equestris	Scaffold001307	1	CH_peq_69	2	2	0.000345363
Phalaenopsis equestris	Scaffold001307	2	CH_peq_69	2	2	0.000345363

GO term	Description	Number of clusters
GO:0035435	phosphate ion transmembrane transport	2
GO:2000185	regulation of phosphate transmembrane transport	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V