Functional clusters   top

Information

Type
GO term
Identifier
GO:0006464
Description
cellular protein modification process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Elaeis guineensisNC_025994.11CH_egu_858100.0000649083
Elaeis guineensisNC_025995.11CH_egu_1028110.000226806
Elaeis guineensisNC_025994.12CH_egu_858100.0000649083
Elaeis guineensisNC_025995.12CH_egu_1028110.000226806
Oryza brachyantha43CH_obr_170890.0000300894
Oryza brachyantha93CH_obr_4427800.000000000506059
Oryza brachyantha44CH_obr_170890.0000300894
Oryza brachyantha94CH_obr_4427800.000000000506059
Oryza sativa ssp. japonicaChr21CH_osa_3198110.000213799
Oryza sativa ssp. japonicaChr22CH_osa_3198110.000213799
Oryza sativa ssp. japonicaChr23CH_osa_5118110.00079229
Oryza sativa ssp. japonicaChr43CH_osa_506780.000734302
Oryza sativa ssp. japonicaChr24CH_osa_5118110.00079229
Oryza sativa ssp. japonicaChr44CH_osa_506780.000734302
Setaria italicascaffold_81CH_sit_11414250.00000011857
Setaria italicascaffold_82CH_sit_11414250.00000011857
Setaria italicascaffold_83CH_sit_22013220.00000172138
Setaria italicascaffold_84CH_sit_22013220.00000172138
Solanum lycopersicumSL2.50ch031CH_sly_22517560.00000757335
Solanum lycopersicumSL2.50ch051CH_sly_9713180.000000000719971
Solanum lycopersicumSL2.50ch032CH_sly_22517560.00000757335
Solanum lycopersicumSL2.50ch052CH_sly_9713180.000000000719971
Solanum lycopersicumSL2.50ch033CH_sly_37518600.000109716
Solanum lycopersicumSL2.50ch034CH_sly_37518600.000109716
Spirodela polyrhizapseudo233CH_spo_7414220.00000019086
Spirodela polyrhizapseudo234CH_spo_7414220.00000019086
Zea mays41CH_zma_1229140.0000601373
Zea mays42CH_zma_1229140.0000601373

Available child term results

GO term Description Number of clusters
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity4
GO:0000209protein polyubiquitination4
GO:0000338protein deneddylation2
GO:0000413protein peptidyl-prolyl isomerization12
GO:0002084protein depalmitoylation4
GO:0006468protein phosphorylation124
GO:0006470protein dephosphorylation6
GO:0006471protein ADP-ribosylation10
GO:0006479protein methylation4
GO:0006480N-terminal protein amino acid methylation12
GO:0006499N-terminal protein myristoylation10
GO:0006517protein deglycosylation2
GO:0008612peptidyl-lysine modification to peptidyl-hypusine12
GO:0009249protein lipoylation2
GO:0010731protein glutathionylation18
GO:0016255attachment of GPI anchor to protein18
GO:0016567protein ubiquitination58
GO:0016571histone methylation2
GO:0016579protein deubiquitination12
GO:0016598protein arginylation4
GO:0016925protein sumoylation10
GO:0017012protein-phytochromobilin linkage2
GO:0017186peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase8
GO:0018160peptidyl-pyrromethane cofactor linkage4
GO:0018171peptidyl-cysteine oxidation8
GO:0018215protein phosphopantetheinylation2
GO:0018279protein N-linked glycosylation via asparagine8
GO:0018298protein-chromophore linkage6
GO:0018343protein farnesylation4
GO:0031396regulation of protein ubiquitination4
GO:0031399regulation of protein modification process2
GO:0033234negative regulation of protein sumoylation8
GO:0035246peptidyl-arginine N-methylation4
GO:0043971histone H3-K18 acetylation6
GO:0043981histone H4-K5 acetylation4
GO:0045116protein neddylation2
GO:0046777protein autophosphorylation2
GO:0050732negative regulation of peptidyl-tyrosine phosphorylation2
GO:0051573negative regulation of histone H3-K9 methylation2
GO:0070212protein poly-ADP-ribosylation2
GO:0070262peptidyl-serine dephosphorylation4
GO:0070536protein K63-linked deubiquitination2
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain2
GO:0071900regulation of protein serine/threonine kinase activity2
GO:0080182histone H3-K4 trimethylation4
GO:0090042tubulin deacetylation2
GO:1900109regulation of histone H3-K9 dimethylation2
GO:1902464regulation of histone H3-K27 trimethylation2
GO:1903320regulation of protein modification by small protein conjugation or removal2
GO:1904666regulation of ubiquitin protein ligase activity2
GO:1904667negative regulation of ubiquitin protein ligase activity10
GO:1904668positive regulation of ubiquitin protein ligase activity6

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
5InterProNo filter applied.230800.001X
6InterProNo filter applied.230800.001V
2GOPrimary GO data only.230800.001V
1GOPrimary GO data only.230800.001X
4GOAll GO data.230800.001V