PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Marchantia polymorpha	scaffold_22	3	CH_mpo_112	5	14	0.000357227
Marchantia polymorpha	scaffold_22	4	CH_mpo_112	5	14	0.000357227
Phalaenopsis equestris	Scaffold000002	3	CH_peq_44	7	27	0.0000010322
Phalaenopsis equestris	Scaffold000002	4	CH_peq_44	7	27	0.0000010322

GO term	Description	Number of clusters
GO:0005784	Sec61 translocon complex	4
GO:0009923	fatty acid elongase complex	16
GO:0033017	sarcoplasmic reticulum membrane	4
GO:0042406	extrinsic component of endoplasmic reticulum membrane	2
GO:0072546	ER membrane protein complex	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V