PLAZA 4.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	Chr4	3	CH_ath_223	5	14	0.000000833737
Arabidopsis thaliana	Chr4	4	CH_ath_223	5	14	0.000000833737
Brachypodium distachyon	Bd1	3	CH_bdi_148	4	7	0.00000561503
Brachypodium distachyon	Bd1	4	CH_bdi_148	4	7	0.00000561503
Musa acuminata	chr9	3	CH_mac_49	5	8	0.0000000858802
Musa acuminata	chr9	4	CH_mac_49	5	8	0.0000000858802
Oropetium thomaeum	Oropetium_genomic_20141112_015	3	CH_oth_77	3	3	0.000111857
Oropetium thomaeum	Oropetium_genomic_20141112_015	4	CH_oth_77	3	3	0.000111857

GO term	Description	Number of clusters
GO:0032497	detection of lipopolysaccharide	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
3	GO	All GO data.	2	30	80	0.001	X
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V
2	GO	Primary GO data only.	2	30	80	0.001	V
1	GO	Primary GO data only.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V