Multiplicon view: 766 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
766 12 17 36 73

Multiplicon Plot


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Gene Information

Gene Family Information

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Draw mode Segment ordering Species

Species Chromosome First Gene Last Gene
Ananas comosus LG07 Aco004839 Aco004865
Ananas comosus LG09 Aco017564 Aco017578
Brachypodium distachyon Bd1 Bradi1g08326 Bradi1g08236
Elaeis guineensis NC_025993.1 EGU2441G0578 EGU2441G1549
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07596 Oropetium_20150105_07612
Oryza brachyantha 3 OB03G41490 OB03G41690
Oryza sativa ssp. indica Chr3 OsR498G0307059800.01 OsR498G0307070000.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g54160 LOC_Os03g54900
Setaria italica scaffold_7 Seita.7G125400 Seita.7G119000
Setaria italica scaffold_9 Seita.9G088700 Seita.9G087600
Sorghum bicolor Chr01 Sobic.001G086400 Sobic.001G085300
Sorghum bicolor Chr06 Sobic.006G107700 Sobic.006G100900
Vitis vinifera chr14 GSVIVG01036549001 GSVIVG01032925001
Zea mays 1 Zm00001d034048 Zm00001d034061
Zea mays 5 Zm00001d013257 Zm00001d013251
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g04580.1.sm.mk Zjn_sc00013.1.g04750.1.sm.mkhc
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04620.1.am.mkhc Zjn_sc00014.1.g04760.1.sm.mkhc

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
765 12 16 5 67

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
19043 2 2 1188 1810