Multiplicon view: 7437 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
7437 15 26 19 74

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Gene Information

Gene Family Information


Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG04 Aco002453 Aco002430
Ananas comosus LG18 Aco001866 Aco001892
Brachypodium distachyon Bd1 Bradi1g62740 Bradi1g62585
Brachypodium distachyon Bd2 Bradi2g59740 Bradi2g60080
Elaeis guineensis NC_025997.1 EGU2621G1445 EGU2621G1697
Elaeis guineensis NC_026006.1 EGU2028G0912 EGU2028G0298
Oropetium thomaeum Oropetium_genomic_20141112_001 Oropetium_20150105_01315 Oropetium_20150105_01319
Oryza brachyantha 1 OB01G51910 OB01G52190
Oryza brachyantha 3 OB03G26640 OB03G26800
Oryza sativa ssp. indica Chr3 OsR498G0305926500.01 OsR498G0305938700.01
Oryza sativa ssp. japonica Chr1 LOC_Os01g70580 LOC_Os01g70930
Oryza sativa ssp. japonica Chr3 LOC_Os03g22410 LOC_Os03g22570
Populus trichocarpa Chr05 Potri.005G025600 Potri.005G028000
Populus trichocarpa Chr13 Potri.013G017166 Potri.013G020100
Populus trichocarpa Chr14 Potri.014G130900 Potri.014G132800
Setaria italica scaffold_5 Seita.5G440600 Seita.5G444200
Setaria italica scaffold_9 Seita.9G407600 Seita.9G405800
Solanum lycopersicum SL2.50ch09 Solyc09g074970.2 Solyc09g074680.2
Sorghum bicolor Chr01 Sobic.001G375200 Sobic.001G373800
Sorghum bicolor Chr03 Sobic.003G414600 Sobic.003G418000
Spirodela polyrhiza pseudo3 Spipo3G0036400 Spipo3G0039500
Vitis vinifera chr5 GSVIVG01017761001 GSVIVG01017737001
Vitis vinifera chr7 GSVIVG01027984001 GSVIVG01010963001
Zea mays 1 Zm00001d029119 Zm00001d029133
Zea mays 3 Zm00001d042241 Zm00001d042191
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
7436 15 25 20 74

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
30749 2 2 40 169
42001 2 2 18 54
51754 2 2 13 42
67712 2 2 10 80
78690 2 2 8 31
107158 2 2 6 28
110299 2 2 6 43
125131 2 2 5 17
125185 2 2 5 17