Multiplicon view: 6915 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6915 14 24 22 66

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Brachypodium distachyon Bd1 Bradi1g72680 Bradi1g72500
Brachypodium distachyon Bd4 Bradi4g31360 Bradi4g31140
Elaeis guineensis NC_026007.1 EGU2755G0385 EGU2755G0439
Oropetium thomaeum Oropetium_genomic_20141112_001 Oropetium_20150105_00265 Oropetium_20150105_00282
Oryza brachyantha 3 OB03G15940 OB03G16080
Oryza sativa ssp. indica Chr3 OsR498G0305327200.01 OsR498G0305336100.01
Oryza sativa ssp. indica Chr9 OsR498G0917544100.01 OsR498G0917527500.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g08230 LOC_Os03g08410
Oryza sativa ssp. japonica Chr9 LOC_Os09g26920 LOC_Os09g26570
Phyllostachys edulis PH01000038 PH01000038G0270 PH01000038G0590
Populus trichocarpa Chr01 Potri.001G167200 Potri.001G164800
Populus trichocarpa Chr03 Potri.003G067700 Potri.003G070500
Populus trichocarpa Chr06 Potri.006G140800 Potri.006G137700
Setaria italica scaffold_2 Seita.2G218700 Seita.2G216100
Setaria italica scaffold_9 Seita.9G518700 Seita.9G517400
Solanum lycopersicum SL2.50ch03 Solyc03g122310.2 Solyc03g122020.2
Sorghum bicolor Chr01 Sobic.001G483300 Sobic.001G482000
Sorghum bicolor Chr02 Sobic.002G216000 Sobic.002G213300
Vitis vinifera chr11 GSVIVG01015065001 GSVIVG01015030001
Vitis vinifera chr9 GSVIVG01016735001 GSVIVG01016701001
Zea mays 1 Zm00001d027894 Zm00001d027911
Zea mays 9 Zm00001d048279 Zm00001d048259
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1 Zjn_sc00002.1.g12650.1.sm.mk Zjn_sc00002.1.g12520.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00003.1 Zjn_sc00003.1.g10680.1.sm.mk Zjn_sc00003.1.g10510.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6914 14 23 23 70

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6916 14 25 17 67
6926 14 25 13 56

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
21229 2 2 693 1445
21475 2 2 642 1438
38103 2 2 22 101
39115 2 2 21 114
55444 2 2 12 57
57235 2 2 12 82
83154 2 2 8 57
113611 2 2 6 58