Multiplicon view: 67 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
67 14 25 15 71

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG07 Aco004966 Aco004983
Ananas comosus LG09 Aco008593 Aco008600
Brachypodium distachyon Bd1 Bradi1g07320 Bradi1g07247
Elaeis guineensis NC_025993.1 EGU2441G2087 EGU2441G1912
Elaeis guineensis NC_026005.1 EGU1474G0781 EGU1474G0038
Elaeis guineensis NW_011550906.1 EGU0727G0001 EGU0727G0108
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07702 Oropetium_20150105_07708
Oryza brachyantha 3 OB03G42580 OB03G42670
Oryza brachyantha 3 OB03G19680 OB03G19510
Oryza sativa ssp. indica Chr3 OsR498G0307115300.01 OsR498G0307121900.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g56000 LOC_Os03g56110
Setaria italica scaffold_9 Seita.9G075400 Seita.9G074700
Setaria italica scaffold_9 Seita.9G483100 Seita.9G481600
Solanum lycopersicum SL2.50ch04 Solyc04g077610.2 Solyc04g077210.2
Sorghum bicolor Chr01 Sobic.001G076000 Sobic.001G075101
Sorghum bicolor Chr01 Sobic.001G449100 Sobic.001G447100
Sorghum bicolor Chr01 Sobic.001G278300 Sobic.001G284100
Spirodela polyrhiza pseudo2 Spipo2G0112500 Spipo2G0108800
Spirodela polyrhiza pseudo9 Spipo9G0025500 Spipo9G0023800
Vitis vinifera chr18 GSVIVG01009313001 GSVIVG01009273001
Zea mays 1 Zm00001d034198 Zm00001d034212
Zea mays 5 Zm00001d013173 Zm00001d013164
Zoysia japonica ssp. nagirizaki Zjn_sc00003.1 Zjn_sc00003.1.g07630.1.am.mk Zjn_sc00003.1.g07400.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g05540.1.am.mk Zjn_sc00013.1.g05700.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g05730.1.am.mk Zjn_sc00014.1.g05830.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
66 14 24 13 71

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
68 14 26 14 71

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
20860 2 2 849 1489
23310 2 2 309 884
67346 2 2 10 58
72638 2 2 9 39
74441 2 2 9 52
98711 2 2 7 61
111138 2 2 6 29
114966 2 2 6 54
137211 2 2 5 35