Multiplicon view: 6380 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6380 14 28 11 56

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG02 Aco001243 Aco001228
Ananas comosus LG06 Aco002761 Aco002788
Ananas comosus LG15 Aco004061 Aco004071
Brachypodium distachyon Bd1 Bradi1g71930 Bradi1g71850
Brachypodium distachyon Bd3 Bradi3g38600 Bradi3g38720
Elaeis guineensis NC_025999.1 EGU1136G1304 EGU1136G0997
Oropetium thomaeum Oropetium_genomic_20141112_001 Oropetium_20150105_00326 Oropetium_20150105_00334
Oropetium thomaeum Oropetium_genomic_20141112_068 Oropetium_20150105_20362 Oropetium_20150105_20349
Oryza brachyantha 3 OB03G16630 OB03G16690
Oryza brachyantha 8 OB08G25440 OB08G25690
Oryza sativa ssp. indica Chr3 OsR498G0305362700.01 OsR498G0305366400.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g08960 LOC_Os03g09060
Populus trichocarpa Chr02 Potri.002G100600 Potri.002G098600
Populus trichocarpa Chr05 Potri.005G161500 Potri.005G163000
Populus trichocarpa Chr05 Potri.005G071900 Potri.005G073600
Populus trichocarpa Chr07 Potri.007G097100 Potri.007G095500
Setaria italica scaffold_6 Seita.6G187700 Seita.6G189100
Setaria italica scaffold_9 Seita.9G511500 Seita.9G510600
Solanum lycopersicum SL2.50ch04 Solyc04g074700.2 Solyc04g074400.1
Solanum lycopersicum SL2.50ch11 Solyc11g010270.1 Solyc11g009050.1
Sorghum bicolor Chr01 Sobic.001G476300 Sobic.001G475600
Sorghum bicolor Chr07 Sobic.007G226600 Sobic.007G225400
Vitis vinifera chr18 GSVIVG01009083001 GSVIVG01009055001
Zea mays 1 Zm00001d027991 Zm00001d028003
Zea mays 9 Zm00001d048227 Zm00001d048223
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1 Zjn_sc00002.1.g12150.1.sm.mkhc Zjn_sc00002.1.g12080.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00003.1 Zjn_sc00003.1.g09940.1.sm.mkhc Zjn_sc00003.1.g09740.1.am.mkhc
Zoysia japonica ssp. nagirizaki Zjn_sc00106.1 Zjn_sc00106.1.g00640.1.sm.mk Zjn_sc00106.1.g00550.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6379 14 27 8 54

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
26815 2 2 82 287
27280 2 2 72 282
27387 2 2 70 260
31741 2 2 36 124
34162 2 2 29 163
50394 2 2 14 86
59216 2 2 11 44
62142 2 2 11 85
91832 2 2 7 37
113486 2 2 6 62
132968 2 2 5 33
140031 2 2 5 45
140032 2 2 5 47