Multiplicon view: 6372 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6372 14 27 15 71

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG02 Aco001251 Aco001230
Ananas comosus LG06 Aco002757 Aco002777
Ananas comosus LG15 Aco004057 Aco004069
Brachypodium distachyon Bd1 Bradi1g71948 Bradi1g71850
Brachypodium distachyon Bd3 Bradi3g38500 Bradi3g38702
Elaeis guineensis NC_025999.1 EGU1136G0123 EGU1136G0997
Oropetium thomaeum Oropetium_genomic_20141112_001 Oropetium_20150105_00326 Oropetium_20150105_00334
Oropetium thomaeum Oropetium_genomic_20141112_068 Oropetium_20150105_20374 Oropetium_20150105_20350
Oryza brachyantha 3 OB03G16620 OB03G16690
Oryza sativa ssp. indica Chr3 OsR498G0305362700.01 OsR498G0305366400.01
Oryza sativa ssp. indica Chr8 OsR498G0816334900.01 OsR498G0816337900.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g08960 LOC_Os03g09060
Populus trichocarpa Chr02 Potri.002G101700 Potri.002G099200
Populus trichocarpa Chr05 Potri.005G161200 Potri.005G162800
Populus trichocarpa Chr05 Potri.005G071400 Potri.005G073500
Populus trichocarpa Chr07 Potri.007G097400 Potri.007G095600
Setaria italica scaffold_6 Seita.6G186700 Seita.6G188800
Setaria italica scaffold_9 Seita.9G511500 Seita.9G510600
Solanum lycopersicum SL2.50ch04 Solyc04g074780.2 Solyc04g074480.2
Solanum lycopersicum SL2.50ch11 Solyc11g010320.1 Solyc11g009070.1
Sorghum bicolor Chr01 Sobic.001G476300 Sobic.001G475600
Sorghum bicolor Chr07 Sobic.007G227700 Sobic.007G225500
Vitis vinifera chr18 GSVIVG01009095001 GSVIVG01009070001
Zea mays 1 Zm00001d027990 Zm00001d028003
Zea mays 9 Zm00001d048227 Zm00001d048223
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1 Zjn_sc00002.1.g12160.1.am.mk Zjn_sc00002.1.g12080.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00003.1 Zjn_sc00003.1.g09940.1.sm.mkhc Zjn_sc00003.1.g09740.1.am.mkhc

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6371 14 26 17 72

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
6373 15 28 14 53
6376 15 28 9 69

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
24965 2 2 148 311
25189 2 2 137 316
25226 2 2 134 357
26700 2 2 85 196
40128 2 2 20 106
55075 2 2 12 58
57617 2 2 12 93
70300 2 2 9 47
73211 2 2 9 67
74684 2 2 9 68
79244 2 2 8 44
89551 2 2 7 34
111921 2 2 6 38