Multiplicon view: 605 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
605 15 30 7 54

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG07 Aco004839 Aco004854
Ananas comosus LG09 Aco017564 Aco017573
Brachypodium distachyon Bd1 Bradi1g08326 Bradi1g08250
Elaeis guineensis NC_025993.1 EGU2441G0578 EGU2441G2459
Elaeis guineensis NC_025998.1 EGU1876G0963 EGU1876G0171
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07596 Oropetium_20150105_07607
Oropetium thomaeum Oropetium_genomic_20141112_036 Oropetium_20150105_16780 Oropetium_20150105_16766
Oryza brachyantha 3 OB03G41490 OB03G41600
Oryza brachyantha 7 OB07G27140 OB07G26940
Oryza sativa ssp. indica Chr3 OsR498G0307059800.01 OsR498G0307068900.01
Oryza sativa ssp. indica Chr7 OsR498G0714725500.01 OsR498G0714716900.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g54160 LOC_Os03g54860
Oryza sativa ssp. japonica Chr7 LOC_Os07g41370 LOC_Os07g41190
Populus trichocarpa Chr08 Potri.008G098200 Potri.008G096800
Populus trichocarpa Chr17 Potri.017G099700 Potri.017G094900
Setaria italica scaffold_2 Seita.2G383000 Seita.2G381600
Setaria italica scaffold_9 Seita.9G088700 Seita.9G087700
Solanum lycopersicum SL2.50ch02 Solyc02g089200.2 Solyc02g089030.1
Solanum lycopersicum SL2.50ch05 Solyc05g056620.1 Solyc05g012210.2
Sorghum bicolor Chr01 Sobic.001G086400 Sobic.001G085400
Sorghum bicolor Chr02 Sobic.002G368700 Sobic.002G367100
Spirodela polyrhiza pseudo2 Spipo2G0082100 Spipo2G0084800
Vitis vinifera chr1 GSVIVG01012250001 GSVIVG01012228001
Vitis vinifera chr14 GSVIVG01036549001 GSVIVG01032913001
Vitis vinifera chr17 GSVIVG01008140001 GSVIVG01008110001
Zea mays 1 Zm00001d034048 Zm00001d034061
Zea mays 5 Zm00001d013257 Zm00001d013251
Zea mays 7 Zm00001d022088 Zm00001d022069
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g04580.1.sm.mk Zjn_sc00013.1.g04700.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04620.1.am.mkhc Zjn_sc00014.1.g04740.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
604 15 29 13 54

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
22268 2 2 437 1249
22961 2 2 388 1058
47960 2 2 15 83
74648 2 2 9 74
80206 2 2 8 35
83475 2 2 8 60
92489 2 2 7 35
94205 2 2 7 37
113829 2 2 6 36
136549 2 2 5 30