Multiplicon view: 597 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
597 16 28 10 61

Multiplicon Plot


Loading...please wait

Gene Information

Gene Family Information

Options

Draw mode Segment ordering Species

Species Chromosome First Gene Last Gene
Ananas comosus LG01 Aco012428 Aco012414
Ananas comosus LG07 Aco004839 Aco004854
Ananas comosus LG09 Aco017564 Aco017573
Arabidopsis thaliana Chr1 AT1G69120 AT1G69260
Arabidopsis thaliana Chr3 AT3G30260 AT3G29575
Brachypodium distachyon Bd1 Bradi1g08326 Bradi1g08250
Elaeis guineensis NC_025993.1 EGU2441G0578 EGU2441G2459
Elaeis guineensis NC_025998.1 EGU1876G0963 EGU1876G0171
Elaeis guineensis NC_026007.1 EGU2755G0841 EGU2755G0570
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07596 Oropetium_20150105_07607
Oryza brachyantha 3 OB03G41490 OB03G41600
Oryza sativa ssp. indica Chr3 OsR498G0307059800.01 OsR498G0307068900.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g54160 LOC_Os03g54860
Populus trichocarpa Chr08 Potri.008G098200 Potri.008G096800
Populus trichocarpa Chr17 Potri.017G099700 Potri.017G094900
Setaria italica scaffold_9 Seita.9G088700 Seita.9G087700
Solanum lycopersicum SL2.50ch02 Solyc02g089200.2 Solyc02g089030.1
Solanum lycopersicum SL2.50ch03 Solyc03g114830.2 Solyc03g115000.2
Solanum lycopersicum SL2.50ch05 Solyc05g056620.1 Solyc05g012210.2
Sorghum bicolor Chr01 Sobic.001G086400 Sobic.001G085400
Spirodela polyrhiza pseudo2 Spipo2G0082100 Spipo2G0084800
Vitis vinifera chr1 GSVIVG01012250001 GSVIVG01012228001
Vitis vinifera chr14 GSVIVG01036549001 GSVIVG01032913001
Vitis vinifera chr17 GSVIVG01008140001 GSVIVG01008110001
Zea mays 1 Zm00001d034048 Zm00001d034061
Zea mays 5 Zm00001d013257 Zm00001d013251
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g04580.1.sm.mk Zjn_sc00013.1.g04700.1.am.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04620.1.am.mkhc Zjn_sc00014.1.g04740.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
594 16 27 18 59

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
598 16 29 14 61

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
49967 2 2 14 93
129120 2 2 5 24