Multiplicon view: 4903 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4903 12 24 7 41

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Gene Information

Gene Family Information


Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG08 Aco014612 Aco014621
Ananas comosus LG25 Aco010157 Aco010167
Brachypodium distachyon Bd1 Bradi1g75620 Bradi1g75500
Brachypodium distachyon Bd3 Bradi3g55237 Bradi3g55287
Brachypodium distachyon Bd3 Bradi3g28220 Bradi3g28065
Oropetium thomaeum Oropetium_genomic_20141112_001 Oropetium_20150105_00036 Oropetium_20150105_00051
Oropetium thomaeum Oropetium_genomic_20141112_069 Oropetium_20150105_19927 Oropetium_20150105_19948
Oryza brachyantha 3 OB03G13290 OB03G13440
Oryza brachyantha 10 OB10G19870 OB10G19690
Oryza sativa ssp. indica Chr10 OsR498G1018865600.01 OsR498G1018856700.01
Oryza sativa ssp. indica Chr2 OsR498G0204332700.01 OsR498G0204322800.01
Oryza sativa ssp. indica Chr3 OsR498G0305210500.01 OsR498G0305218700.01
Oryza sativa ssp. japonica Chr10 LOC_Os10g32820 LOC_Os10g32500
Oryza sativa ssp. japonica Chr3 LOC_Os03g04750 LOC_Os03g04990
Phyllostachys edulis PH01000010 PH01000010G1120 PH01000010G1610
Setaria italica scaffold_9 Seita.9G544700 Seita.9G543100
Setaria italica scaffold_9 Seita.9G229600 Seita.9G231400
Sorghum bicolor Chr01 Sobic.001G508900 Sobic.001G507300
Sorghum bicolor Chr06 Sobic.006G142500 Sobic.006G140300
Spirodela polyrhiza pseudo1 Spipo1G0011900 Spipo1G0013700
Zea mays 1 Zm00001d027618 Zm00001d027630
Zea mays 10 Zm00001d025825 Zm00001d025815
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1
Zoysia japonica ssp. nagirizaki Zjn_sc00003.1

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4902 12 23 10 54

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
31727 2 2 36 161
42930 2 2 18 123