Multiplicon view: 4055 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4055 9 16 9 65

Multiplicon Plot


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Gene Information

Gene Family Information

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Draw mode Segment ordering Species

Species Chromosome First Gene Last Gene
Ananas comosus LG12 Aco000684 Aco000701
Ananas comosus LG13 Aco013677 Aco013647
Brachypodium distachyon Bd1 Bradi1g02790 Bradi1g02710
Brachypodium distachyon Bd2 Bradi2g11410 Bradi2g11200
Oropetium thomaeum Oropetium_genomic_20141112_062 Oropetium_20150105_22919 Oropetium_20150105_22946
Oryza brachyantha 3 OB03G47020 OB03G47110
Oryza sativa ssp. indica Chr1 OsR498G0100730500.01 OsR498G0100711000.01
Oryza sativa ssp. indica Chr3 OsR498G0307321500.01 OsR498G0307324800.01
Oryza sativa ssp. indica Chr5 OsR498G0509678900.01 OsR498G0509696100.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g61740 LOC_Os03g61810
Oryza sativa ssp. japonica Chr5 LOC_Os05g04330 LOC_Os05g04600
Setaria italica scaffold_3 Seita.3G052000 Seita.3G054200
Setaria italica scaffold_9 Seita.9G023000 Seita.9G022300
Sorghum bicolor Chr01 Sobic.001G026300 Sobic.001G026950
Sorghum bicolor Chr09 Sobic.009G032200 Sobic.009G034500
Vitis vinifera chr5 GSVIVG01017648001 GSVIVG01017698001

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4054 9 15 16 55

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
105253 2 2 6 35
111857 2 2 6 38