Multiplicon view: 2649 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
2649 16 34 9 47

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG13 Aco014145 Aco014129
Arabidopsis thaliana Chr3 AT3G53960 AT3G54030
Brachypodium distachyon Bd1 Bradi1g03500 Bradi1g03410
Brachypodium distachyon Bd2 Bradi2g23530 Bradi2g23610
Brachypodium distachyon Bd2 Bradi2g54940 Bradi2g55030
Elaeis guineensis NC_025997.1 EGU2621G0261 EGU2621G0193
Elaeis guineensis NW_011550964.1 EGU1663G0006 EGU1663G0009
Oropetium thomaeum Oropetium_genomic_20141112_003 Oropetium_20150105_04913 Oropetium_20150105_04922
Oropetium thomaeum Oropetium_genomic_20141112_033 Oropetium_20150105_12783 Oropetium_20150105_12795
Oropetium thomaeum Oropetium_genomic_20141112_100 Oropetium_20150105_23685 Oropetium_20150105_23675
Oryza brachyantha 3 OB03G46300 OB03G46440
Oryza brachyantha 5 OB05G26540 OB05G26460
Oryza sativa ssp. indica Chr1 OsR498G0102332000.01 OsR498G0102339200.01
Oryza sativa ssp. indica Chr3 OsR498G0307296800.01 OsR498G0307301400.01
Oryza sativa ssp. japonica Chr1 LOC_Os01g62920 LOC_Os01g63060
Oryza sativa ssp. japonica Chr3 LOC_Os03g60850 LOC_Os03g61019
Populus trichocarpa Chr06 Potri.006G092100 Potri.006G094000
Populus trichocarpa Chr08 Potri.008G061000 Potri.008G062600
Populus trichocarpa Chr09 Potri.009G037750 Potri.009G039700
Populus trichocarpa Chr10 Potri.010G197300 Potri.010G195100
Setaria italica scaffold_5 Seita.5G381300 Seita.5G382500
Setaria italica scaffold_9 Seita.9G030500 Seita.9G028900
Solanum lycopersicum SL2.50ch09 Solyc09g011380.2 Solyc09g011770.2
Sorghum bicolor Chr01 Sobic.001G032000 Sobic.001G030300
Sorghum bicolor Chr03 Sobic.003G356200 Sobic.003G357166
Spirodela polyrhiza pseudo23 Spipo23G0011000 Spipo23G0008900
Vitis vinifera chr13 GSVIVG01016458001 GSVIVG01016394001
Vitis vinifera chr6 GSVIVG01024865001 GSVIVG01024828001
Zea mays 1 Zm00001d034674 Zm00001d034698
Zea mays 3 Zm00001d042864 Zm00001d042850
Zea mays 5 Zm00001d012936 Zm00001d012929
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g08840.1.am.mkhc Zjn_sc00013.1.g08960.1.am.mkhc
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g08900.1.am.mk Zjn_sc00014.1.g08980.1.sm.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00040.1 Zjn_sc00040.1.g05220.1.sm.mkhc Zjn_sc00040.1.g05370.1.sm.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
2648 16 33 8 47

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
21914 2 2 528 1202
23197 2 2 332 797
24284 2 2 195 793
24780 2 2 165 758
24889 2 2 155 677
24978 2 2 148 723
25231 2 2 134 604
26001 2 2 105 399
26658 2 2 87 527
27403 2 2 70 316
41278 2 2 19 104
41525 2 2 19 112
41587 2 2 19 120
44152 2 2 17 96
44169 2 2 17 86
46351 2 2 16 107
53133 2 2 13 77
61040 2 2 11 58
66531 2 2 10 56
79519 2 2 8 51