Multiplicon view: 2372 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
2372 16 33 14 71

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG18 Aco001460 Aco001445
Brachypodium distachyon Bd1 Bradi1g03720 Bradi1g03627
Elaeis guineensis NC_025997.1 EGU2621G0962 EGU2621G0808
Elaeis guineensis NC_025997.1 EGU2621G0641 EGU2621G0219
Elaeis guineensis NC_026002.1 EGU2211G0745 EGU2211G0131
Elaeis guineensis NC_026006.1 EGU2028G0095 EGU2028G0210
Hordeum vulgare 5 HVU0041G1278 HVU0041G1747
Oropetium thomaeum Oropetium_genomic_20141112_100 Oropetium_20150105_23711 Oropetium_20150105_23699
Oryza brachyantha 1 OB01G13200 OB01G13080
Oryza brachyantha 3 OB03G46070 OB03G46200
Oryza sativa ssp. indica Chr1 OsR498G0100180100.01 OsR498G0100171500.01
Oryza sativa ssp. indica Chr12 OsR498G1221905900.01 OsR498G1221916500.01
Oryza sativa ssp. indica Chr3 OsR498G0307287500.01 OsR498G0307294300.01
Oryza sativa ssp. japonica Chr1 LOC_Os01g05680 LOC_Os01g05430
Oryza sativa ssp. japonica Chr11 LOC_Os11g47750 LOC_Os11g47840
Oryza sativa ssp. japonica Chr12 LOC_Os12g38180 LOC_Os12g38450
Oryza sativa ssp. japonica Chr3 LOC_Os03g60620 LOC_Os03g60750
Populus trichocarpa Chr01 Potri.001G238400 Potri.001G241300
Populus trichocarpa Chr08 Potri.008G054500 Potri.008G057200
Populus trichocarpa Chr09 Potri.009G029500 Potri.009G031900
Populus trichocarpa Chr10 Potri.010G206001 Potri.010G202500
Setaria italica scaffold_5 Seita.5G103900 Seita.5G101700
Setaria italica scaffold_9 Seita.9G033500 Seita.9G032100
Solanum lycopersicum SL2.50ch06 Solyc06g076020.2 Solyc06g076260.2
Sorghum bicolor Chr01 Sobic.001G034400 Sobic.001G033300
Sorghum bicolor Chr03 Sobic.003G071000 Sobic.003G072900
Spirodela polyrhiza pseudo22 Spipo22G0037000 Spipo22G0038000
Spirodela polyrhiza pseudo23 Spipo23G0020700 Spipo23G0016100
Vitis vinifera chr8 GSVIVG01034195001 GSVIVG01034160001
Zea mays 1 Zm00001d034651 Zm00001d034663
Zea mays 5 Zm00001d012963 Zm00001d012956
Zoysia japonica ssp. nagirizaki Zjn_sc00013.1 Zjn_sc00013.1.g08610.1.am.mk Zjn_sc00013.1.g08730.1.sm.mkhc
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g08710.1.am.mk Zjn_sc00014.1.g08810.1.sm.mkhc

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
2371 16 32 15 71

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
2373 16 34 14 71

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
21169 2 2 702 1838
23132 2 2 358 827
23534 2 2 279 623
24379 2 2 186 440
45548 2 2 16 72
60046 2 2 11 60
66949 2 2 10 54
98171 2 2 7 67
98342 2 2 7 76
138033 2 2 5 27