Multiplicon view:
1
(Experiment Id: 1)
The Multiplicon view displays the aligned gene strings of a set of homologous segments.
Multiplicon Information
Multiplicon Id | #Species | #Segments | #Anchorpoints | Profile Length |
---|---|---|---|---|
1 | 2 | 2 | 2728 | 4749 |

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Gene Information
Gene Family Information
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Segment ordering
Species
Species | Chromosome | First Gene | Last Gene |
---|---|---|---|
Oryza sativa ssp. indica | Chr3 | OsR498G0305064700.01 | OsR498G0307407000.01 |
Oryza sativa ssp. japonica | Chr3 | LOC_Os03g01008 | LOC_Os03g64415 |
This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.
Multiplicon Id | #Species | #Segments | #Anchorpoints | Profile Length |
---|---|---|---|---|
2 | 3 | 3 | 1025 | 2290 |
4866 | 3 | 3 | 914 | 2225 |
8856 | 3 | 3 | 771 | 2362 |
9050 | 3 | 3 | 706 | 1573 |
9089 | 3 | 3 | 614 | 1187 |
9095 | 3 | 3 | 595 | 1075 |
9098 | 3 | 3 | 580 | 1146 |
9106 | 3 | 3 | 467 | 1012 |
9110 | 3 | 3 | 422 | 1495 |
9139 | 3 | 3 | 418 | 1007 |
9144 | 3 | 3 | 396 | 799 |
9148 | 3 | 3 | 374 | 1197 |
9150 | 3 | 3 | 328 | 703 |
9153 | 3 | 3 | 323 | 712 |
9155 | 3 | 3 | 283 | 916 |
9159 | 3 | 3 | 214 | 666 |
9160 | 3 | 3 | 171 | 590 |
9203 | 3 | 3 | 138 | 666 |
9207 | 3 | 3 | 136 | 490 |
9258 | 3 | 3 | 131 | 373 |
9261 | 3 | 3 | 130 | 272 |
9265 | 3 | 3 | 122 | 711 |
9269 | 3 | 3 | 116 | 713 |
9273 | 3 | 3 | 96 | 358 |
9335 | 3 | 3 | 93 | 255 |
9347 | 3 | 3 | 88 | 157 |
9348 | 3 | 3 | 86 | 378 |
9349 | 3 | 3 | 78 | 358 |
9375 | 2 | 3 | 78 | 479 |
9377 | 3 | 3 | 73 | 258 |
9378 | 3 | 3 | 71 | 220 |
9380 | 2 | 3 | 69 | 394 |
9381 | 3 | 3 | 68 | 140 |
9382 | 3 | 3 | 67 | 447 |
9415 | 3 | 3 | 64 | 395 |
9419 | 3 | 3 | 64 | 390 |
9420 | 3 | 3 | 63 | 239 |
9449 | 3 | 3 | 63 | 348 |
9456 | 3 | 3 | 62 | 196 |
9462 | 3 | 3 | 62 | 346 |
9463 | 3 | 3 | 60 | 419 |
9464 | 3 | 3 | 59 | 114 |
9465 | 3 | 3 | 56 | 181 |
9469 | 3 | 3 | 56 | 298 |
9473 | 3 | 3 | 55 | 316 |
9481 | 2 | 3 | 52 | 293 |
9482 | 2 | 3 | 50 | 357 |
9483 | 3 | 3 | 49 | 298 |
9487 | 3 | 3 | 47 | 284 |
9488 | 3 | 3 | 46 | 244 |
9499 | 3 | 3 | 44 | 191 |
9502 | 3 | 3 | 44 | 285 |
9505 | 3 | 3 | 43 | 229 |
9512 | 3 | 3 | 41 | 274 |
9514 | 3 | 3 | 40 | 203 |
9517 | 3 | 3 | 40 | 215 |
9519 | 3 | 3 | 40 | 267 |
9520 | 3 | 3 | 38 | 249 |
9523 | 3 | 3 | 37 | 241 |
9524 | 3 | 3 | 36 | 149 |
9544 | 3 | 3 | 35 | 69 |
9545 | 2 | 3 | 35 | 194 |
9548 | 3 | 3 | 35 | 281 |
9549 | 3 | 3 | 34 | 154 |
9551 | 2 | 3 | 34 | 189 |
9552 | 3 | 3 | 34 | 203 |
9553 | 3 | 3 | 33 | 128 |
9554 | 3 | 3 | 33 | 211 |
9558 | 3 | 3 | 33 | 235 |
9559 | 3 | 3 | 32 | 194 |
9584 | 2 | 3 | 32 | 174 |
9586 | 3 | 3 | 32 | 138 |
9587 | 3 | 3 | 32 | 143 |
9600 | 3 | 3 | 32 | 191 |
9608 | 3 | 3 | 31 | 153 |
9610 | 3 | 3 | 29 | 60 |
9611 | 3 | 3 | 29 | 165 |
9632 | 3 | 3 | 29 | 173 |
9634 | 3 | 3 | 29 | 178 |
9636 | 3 | 3 | 29 | 193 |
9637 | 3 | 3 | 29 | 185 |
9638 | 3 | 3 | 28 | 93 |
9639 | 2 | 3 | 28 | 181 |
9640 | 3 | 3 | 27 | 44 |
9641 | 3 | 3 | 27 | 141 |
9646 | 3 | 3 | 27 | 171 |
9648 | 2 | 3 | 27 | 181 |
9649 | 3 | 3 | 26 | 140 |
9650 | 3 | 3 | 26 | 143 |
9654 | 3 | 3 | 26 | 182 |
9656 | 3 | 3 | 25 | 69 |
9657 | 3 | 3 | 25 | 117 |
9658 | 3 | 3 | 25 | 119 |
9660 | 3 | 3 | 25 | 183 |
9661 | 3 | 3 | 24 | 109 |
9663 | 3 | 3 | 24 | 108 |
9664 | 3 | 3 | 24 | 108 |
9665 | 3 | 3 | 24 | 181 |
9666 | 3 | 3 | 23 | 67 |
9667 | 3 | 3 | 23 | 131 |
9672 | 3 | 3 | 22 | 121 |
9678 | 3 | 3 | 22 | 93 |
9679 | 3 | 3 | 22 | 153 |
9682 | 3 | 3 | 22 | 152 |
9683 | 3 | 3 | 22 | 166 |
9684 | 3 | 3 | 21 | 103 |
9685 | 3 | 3 | 21 | 96 |
9686 | 3 | 3 | 21 | 79 |
9687 | 3 | 3 | 21 | 98 |
9689 | 3 | 3 | 21 | 137 |
9690 | 3 | 3 | 20 | 107 |
9691 | 3 | 3 | 20 | 107 |
9692 | 3 | 3 | 20 | 150 |
9693 | 3 | 3 | 20 | 174 |
9694 | 3 | 3 | 20 | 163 |
9697 | 3 | 3 | 20 | 139 |
9699 | 3 | 3 | 19 | 67 |
9700 | 3 | 3 | 19 | 78 |
9703 | 3 | 3 | 19 | 86 |
9704 | 3 | 3 | 19 | 85 |
9707 | 2 | 3 | 19 | 123 |
9708 | 3 | 3 | 19 | 150 |
9710 | 3 | 3 | 19 | 137 |
9711 | 3 | 3 | 18 | 101 |
9713 | 3 | 3 | 18 | 119 |
9715 | 3 | 3 | 18 | 88 |
9716 | 3 | 3 | 18 | 101 |
9719 | 3 | 3 | 17 | 36 |
9720 | 3 | 3 | 17 | 106 |
9723 | 3 | 3 | 17 | 80 |
9724 | 3 | 3 | 17 | 134 |
9729 | 3 | 3 | 16 | 35 |
9730 | 3 | 3 | 16 | 90 |
9731 | 3 | 3 | 16 | 95 |
9735 | 3 | 3 | 16 | 89 |
9738 | 3 | 3 | 16 | 116 |
9739 | 3 | 3 | 16 | 104 |
9741 | 3 | 3 | 15 | 40 |
9742 | 3 | 3 | 15 | 52 |
9743 | 3 | 3 | 15 | 51 |
9744 | 3 | 3 | 15 | 88 |
9746 | 3 | 3 | 15 | 92 |
9748 | 3 | 3 | 15 | 127 |
9749 | 3 | 3 | 15 | 90 |
9750 | 3 | 3 | 15 | 122 |
9752 | 3 | 3 | 15 | 130 |
9753 | 3 | 3 | 15 | 152 |
9754 | 3 | 3 | 14 | 28 |
9755 | 3 | 3 | 14 | 92 |
9757 | 3 | 3 | 14 | 80 |
9758 | 3 | 3 | 14 | 94 |
9760 | 3 | 3 | 14 | 77 |
9761 | 3 | 3 | 14 | 82 |
9763 | 3 | 3 | 14 | 96 |
9764 | 3 | 3 | 14 | 141 |
9765 | 3 | 3 | 14 | 112 |
9766 | 3 | 3 | 14 | 106 |
9767 | 3 | 3 | 13 | 56 |
9769 | 3 | 3 | 13 | 62 |
9776 | 3 | 3 | 13 | 59 |
9777 | 3 | 3 | 13 | 65 |
9778 | 3 | 3 | 13 | 82 |
9779 | 3 | 3 | 13 | 92 |
9780 | 3 | 3 | 13 | 90 |
9781 | 3 | 3 | 13 | 83 |
9782 | 3 | 3 | 13 | 108 |
9783 | 3 | 3 | 13 | 142 |
9784 | 3 | 3 | 13 | 110 |
9785 | 3 | 3 | 13 | 99 |
9786 | 3 | 3 | 12 | 24 |
9787 | 3 | 3 | 12 | 27 |
9788 | 3 | 3 | 12 | 57 |
9790 | 3 | 3 | 12 | 33 |
9791 | 3 | 3 | 12 | 43 |
9794 | 3 | 3 | 12 | 59 |
9795 | 3 | 3 | 12 | 58 |
9800 | 3 | 3 | 12 | 92 |
9807 | 3 | 3 | 12 | 67 |
9810 | 2 | 3 | 12 | 103 |
9816 | 3 | 3 | 12 | 80 |
9817 | 3 | 3 | 12 | 73 |
9818 | 3 | 3 | 12 | 87 |
9819 | 3 | 3 | 12 | 110 |
9820 | 3 | 3 | 12 | 95 |
9822 | 3 | 3 | 12 | 195 |
9824 | 3 | 3 | 12 | 101 |
9826 | 3 | 3 | 12 | 121 |
9827 | 3 | 3 | 12 | 87 |
9828 | 3 | 3 | 12 | 84 |
9829 | 3 | 3 | 12 | 131 |
9830 | 3 | 3 | 11 | 29 |
9831 | 3 | 3 | 11 | 44 |
9838 | 3 | 3 | 11 | 59 |
9839 | 3 | 3 | 11 | 46 |
9840 | 3 | 3 | 11 | 56 |
9841 | 3 | 3 | 11 | 59 |
9842 | 3 | 3 | 11 | 82 |
9844 | 3 | 3 | 11 | 74 |
9845 | 3 | 3 | 11 | 100 |
9850 | 3 | 3 | 11 | 73 |
9851 | 3 | 3 | 11 | 100 |
9852 | 2 | 3 | 11 | 106 |
9853 | 3 | 3 | 11 | 69 |
9854 | 3 | 3 | 11 | 73 |
9855 | 3 | 3 | 11 | 105 |
9857 | 3 | 3 | 11 | 114 |
9858 | 3 | 3 | 11 | 93 |
9860 | 3 | 3 | 11 | 91 |
9862 | 3 | 3 | 10 | 31 |
9863 | 3 | 3 | 10 | 56 |
9864 | 3 | 3 | 10 | 83 |
9865 | 3 | 3 | 10 | 74 |
9867 | 3 | 3 | 10 | 93 |
9868 | 3 | 3 | 10 | 78 |
9869 | 3 | 3 | 10 | 66 |
9871 | 3 | 3 | 10 | 66 |
9872 | 3 | 3 | 10 | 78 |
9873 | 3 | 3 | 10 | 93 |
9874 | 3 | 3 | 10 | 78 |
9875 | 3 | 3 | 10 | 63 |
9876 | 3 | 3 | 10 | 83 |
9877 | 3 | 3 | 10 | 61 |
9878 | 3 | 3 | 10 | 78 |
9879 | 3 | 3 | 10 | 77 |
9880 | 3 | 3 | 10 | 77 |
9881 | 3 | 3 | 10 | 80 |
9905 | 3 | 3 | 9 | 27 |
9906 | 3 | 3 | 9 | 52 |
9907 | 3 | 3 | 9 | 48 |
9908 | 3 | 3 | 9 | 56 |
9909 | 3 | 3 | 9 | 50 |
9910 | 3 | 3 | 9 | 48 |
9911 | 3 | 3 | 9 | 42 |
9913 | 3 | 3 | 9 | 64 |
9914 | 2 | 3 | 9 | 62 |
9915 | 3 | 3 | 9 | 43 |
9916 | 3 | 3 | 9 | 44 |
9918 | 3 | 3 | 9 | 80 |
9920 | 3 | 3 | 9 | 72 |
9923 | 3 | 3 | 9 | 74 |
9924 | 3 | 3 | 9 | 68 |
9925 | 3 | 3 | 9 | 92 |
9927 | 2 | 3 | 8 | 9 |
9928 | 3 | 3 | 8 | 16 |
9929 | 3 | 3 | 8 | 38 |
9936 | 3 | 3 | 8 | 50 |
9937 | 3 | 3 | 8 | 41 |
9938 | 3 | 3 | 8 | 27 |
9939 | 2 | 3 | 8 | 46 |
9942 | 3 | 3 | 8 | 43 |
9953 | 3 | 3 | 8 | 39 |
9954 | 2 | 3 | 8 | 48 |
9955 | 3 | 3 | 8 | 48 |
9956 | 3 | 3 | 8 | 49 |
9957 | 3 | 3 | 8 | 47 |
9958 | 3 | 3 | 8 | 66 |
9959 | 2 | 3 | 8 | 45 |
9960 | 2 | 3 | 8 | 46 |
9961 | 3 | 3 | 8 | 58 |
9965 | 3 | 3 | 8 | 54 |
9966 | 3 | 3 | 8 | 82 |
9967 | 3 | 3 | 8 | 64 |
9969 | 3 | 3 | 8 | 46 |
9970 | 3 | 3 | 8 | 76 |
9971 | 2 | 3 | 8 | 64 |
9972 | 3 | 3 | 8 | 57 |
9974 | 3 | 3 | 8 | 53 |
9975 | 3 | 3 | 8 | 50 |
9976 | 2 | 3 | 8 | 62 |
9977 | 3 | 3 | 8 | 55 |
9978 | 3 | 3 | 8 | 77 |
9980 | 3 | 3 | 8 | 65 |
9981 | 3 | 3 | 8 | 64 |
9982 | 3 | 3 | 8 | 135 |
9983 | 3 | 3 | 7 | 11 |
9984 | 3 | 3 | 7 | 26 |
9985 | 3 | 3 | 7 | 31 |
9986 | 3 | 3 | 7 | 20 |
9987 | 3 | 3 | 7 | 38 |
9988 | 3 | 3 | 7 | 29 |
9991 | 3 | 3 | 7 | 34 |
9992 | 3 | 3 | 7 | 57 |
9993 | 3 | 3 | 7 | 37 |
9994 | 3 | 3 | 7 | 36 |
9995 | 3 | 3 | 7 | 49 |
9997 | 3 | 3 | 7 | 28 |
9998 | 3 | 3 | 7 | 33 |
9999 | 3 | 3 | 7 | 46 |
10000 | 3 | 3 | 7 | 40 |
10001 | 3 | 3 | 7 | 59 |
10002 | 3 | 3 | 7 | 39 |
10003 | 3 | 3 | 7 | 57 |
10006 | 3 | 3 | 7 | 39 |
10007 | 3 | 3 | 7 | 57 |
10008 | 3 | 3 | 7 | 53 |
10009 | 3 | 3 | 7 | 57 |
10010 | 3 | 3 | 7 | 41 |
10011 | 3 | 3 | 7 | 59 |
10012 | 3 | 3 | 7 | 53 |
10013 | 3 | 3 | 7 | 59 |
10014 | 3 | 3 | 7 | 95 |
10015 | 3 | 3 | 7 | 54 |
10016 | 3 | 3 | 7 | 49 |
10017 | 3 | 3 | 7 | 43 |
10018 | 2 | 3 | 7 | 57 |
10019 | 3 | 3 | 7 | 47 |
10020 | 3 | 3 | 7 | 56 |
10021 | 2 | 3 | 7 | 89 |
10025 | 3 | 3 | 7 | 53 |
10026 | 3 | 3 | 7 | 57 |
10027 | 3 | 3 | 7 | 61 |
10028 | 3 | 3 | 7 | 67 |
10029 | 3 | 3 | 7 | 51 |
10030 | 3 | 3 | 7 | 71 |
10031 | 3 | 3 | 7 | 94 |
10037 | 2 | 3 | 6 | 6 |
10038 | 3 | 3 | 6 | 8 |
10042 | 3 | 3 | 6 | 9 |
10044 | 3 | 3 | 6 | 27 |
10045 | 3 | 3 | 6 | 16 |
10046 | 3 | 3 | 6 | 31 |
10047 | 3 | 3 | 6 | 22 |
10048 | 3 | 3 | 6 | 19 |
10049 | 3 | 3 | 6 | 42 |
10050 | 3 | 3 | 6 | 24 |
10051 | 3 | 3 | 6 | 33 |
10052 | 2 | 3 | 6 | 32 |
10054 | 3 | 3 | 6 | 21 |
10055 | 3 | 3 | 6 | 21 |
10056 | 3 | 3 | 6 | 41 |
10057 | 3 | 3 | 6 | 36 |
10058 | 3 | 3 | 6 | 50 |
10059 | 3 | 3 | 6 | 35 |
10060 | 3 | 3 | 6 | 35 |
10061 | 3 | 3 | 6 | 32 |
10062 | 3 | 3 | 6 | 38 |
10063 | 3 | 3 | 6 | 51 |
10064 | 3 | 3 | 6 | 57 |
10065 | 3 | 3 | 6 | 36 |
10066 | 3 | 3 | 6 | 34 |
10067 | 3 | 3 | 6 | 51 |
10068 | 3 | 3 | 6 | 39 |
10069 | 3 | 3 | 6 | 37 |
10070 | 3 | 3 | 6 | 50 |
10071 | 3 | 3 | 6 | 64 |
10072 | 3 | 3 | 6 | 49 |
10073 | 3 | 3 | 6 | 38 |
10074 | 3 | 3 | 6 | 42 |
10075 | 3 | 3 | 6 | 45 |
10076 | 3 | 3 | 6 | 50 |
10077 | 3 | 3 | 6 | 56 |
10078 | 3 | 3 | 6 | 46 |
10079 | 3 | 3 | 6 | 40 |
10080 | 3 | 3 | 6 | 54 |
10081 | 3 | 3 | 6 | 83 |
10083 | 3 | 3 | 6 | 62 |
10084 | 3 | 3 | 6 | 59 |
10085 | 2 | 3 | 6 | 107 |
10086 | 3 | 3 | 6 | 64 |
10087 | 2 | 3 | 6 | 104 |
10088 | 3 | 3 | 5 | 10 |
10089 | 3 | 3 | 5 | 18 |
10090 | 3 | 3 | 5 | 20 |
10091 | 3 | 3 | 5 | 21 |
10092 | 3 | 3 | 5 | 21 |
10094 | 2 | 3 | 5 | 29 |
10095 | 3 | 3 | 5 | 31 |
10096 | 3 | 3 | 5 | 30 |
10097 | 3 | 3 | 5 | 26 |
10098 | 3 | 3 | 5 | 21 |
10099 | 3 | 3 | 5 | 19 |
10100 | 3 | 3 | 5 | 39 |
10101 | 3 | 3 | 5 | 33 |
10102 | 3 | 3 | 5 | 29 |
10103 | 3 | 3 | 5 | 22 |
10104 | 3 | 3 | 5 | 36 |
10105 | 3 | 3 | 5 | 34 |
10106 | 3 | 3 | 5 | 36 |
10107 | 3 | 3 | 5 | 38 |
10108 | 3 | 3 | 5 | 23 |
10109 | 3 | 3 | 5 | 30 |
10110 | 3 | 3 | 5 | 45 |
10111 | 3 | 3 | 5 | 43 |
10112 | 3 | 3 | 5 | 28 |
10113 | 2 | 3 | 5 | 34 |
10114 | 3 | 3 | 5 | 35 |
10116 | 3 | 3 | 5 | 31 |
10117 | 3 | 3 | 5 | 43 |
10118 | 3 | 3 | 5 | 33 |
10119 | 3 | 3 | 5 | 43 |
10120 | 3 | 3 | 5 | 39 |
10121 | 3 | 3 | 5 | 37 |
10122 | 3 | 3 | 5 | 32 |
10123 | 3 | 3 | 5 | 33 |
10124 | 3 | 3 | 5 | 60 |
10125 | 3 | 3 | 5 | 50 |
10126 | 3 | 3 | 5 | 65 |
10127 | 3 | 3 | 5 | 42 |
10128 | 3 | 3 | 5 | 46 |
10129 | 3 | 3 | 5 | 64 |
10130 | 3 | 3 | 5 | 42 |
10131 | 3 | 3 | 5 | 37 |
10132 | 3 | 3 | 5 | 47 |
10133 | 3 | 3 | 5 | 54 |
10145 | 3 | 3 | 5 | 45 |
10146 | 3 | 3 | 5 | 55 |
10147 | 3 | 3 | 5 | 40 |
10148 | 3 | 3 | 5 | 61 |
10149 | 3 | 3 | 5 | 45 |
10150 | 3 | 3 | 5 | 57 |
10151 | 3 | 3 | 5 | 34 |
10152 | 3 | 3 | 5 | 40 |
10153 | 2 | 3 | 5 | 44 |
10154 | 3 | 3 | 5 | 39 |
10155 | 2 | 3 | 5 | 55 |
10156 | 3 | 3 | 5 | 46 |
10157 | 3 | 3 | 5 | 73 |
10158 | 3 | 3 | 5 | 77 |
10159 | 3 | 3 | 5 | 73 |
10160 | 3 | 3 | 5 | 60 |
10161 | 3 | 3 | 5 | 71 |
This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.
Multiplicon Id | #Species | #Segments | #Anchorpoints | Profile Length |
---|---|---|---|---|
126483 | 2 | 2 | 5 | 27 |