Interactive Phylogenetics Module

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
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Include Gene ID Organism Gene Family E-value Bitscore Alignment Length Identity Percentage
LOC_Os11g05230 Oryza sativa ssp. japonica HOM04M000086 1.7e-96 354.8 302 100.0
OsR498G1119419100.01 Oryza sativa ssp. indica HOM04M000086 4.7e-33 144.1 65 98.5
OB11G12520 Oryza brachyantha HOM04M000086 1.5e-18 95.9 321 37.7
Bradi4g42660 Brachypodium distachyon HOM04M001134 8.0e-17 90.1 53 66.0
OB11G12510 Oryza brachyantha HOM04M000086 1.8e-16 89.0 49 73.5
Bradi4g42671 Brachypodium distachyon HOM04M001134 5.7e-15 84.0 49 65.3
Bradi4g42649 Brachypodium distachyon HOM04M000086 7.5e-15 83.6 49 67.3
Bradi4g42730 Brachypodium distachyon HOM04M000086 9.8e-15 83.2 53 62.3
LOC_Os11g05200 Oryza sativa ssp. japonica HOM04M000086 2.2e-14 82.0 49 65.3
Sobic.005G035400 Sorghum bicolor HOM04M000086 8.3e-14 80.1 59 52.5
Bradi3g34010 Brachypodium distachyon HOM04M000086 1.1e-13 79.7 53 56.6
LOC_Os12g05270 Oryza sativa ssp. japonica HOM04M000086 1.4e-13 79.3 54 51.9
Bradi4g42700 Brachypodium distachyon HOM04M000086 1.2e-12 76.3 49 61.2
Sobic.005G035800 Sorghum bicolor HOM04M000086 2.7e-12 75.1 55 50.9
OsR498G1220939300.01 Oryza sativa ssp. indica HOM04M000086 2.7e-12 75.1 54 50.0
Sobic.005G035700 Sorghum bicolor HOM04M000086 1.0e-11 73.2 60 56.7
Bradi4g42643 Brachypodium distachyon HOM04M000086 1.3e-11 72.8 49 59.2
OB11G12140 Oryza brachyantha HOM04M000086 2.9e-11 71.6 60 50.0
LOC_Os12g05280 Oryza sativa ssp. japonica HOM04M000086 2.9e-11 71.6 54 48.1
Seita.6G143700 Setaria italica HOM04M000086 2.9e-11 71.6 51 52.9
Oropetium_20150105_15058 Oropetium thomaeum HOM04M000086 5.0e-11 70.9 58 55.2
Oropetium_20150105_10984 Oropetium thomaeum HOM04M000086 5.0e-11 70.9 52 53.8
EGU2621G1527 Elaeis guineensis HOM04M000086 6.6e-11 70.5 51 51.0
Zm00001d052593 Zea mays HOM04M000086 8.6e-11 70.1 47 55.3
Seita.9G178700 Setaria italica HOM04M000086 2.5e-10 68.6 55 45.5
EGU2028G0781 Elaeis guineensis HOM04M000086 2.5e-10 68.6 55 47.3
OsR498G1119407500.01 Oryza sativa ssp. indica HOM04M000086 3.3e-10 68.2 54 48.1
Zm00001d052505 Zea mays HOM04M014391 3.3e-10 68.2 47 57.4
OB12G12800 Oryza brachyantha HOM04M000086 3.3e-10 68.2 59 44.1
Bradi5g16896 Brachypodium distachyon HOM04M000086 5.6e-10 67.4 53 49.1
TAE31632G001 Triticum aestivum HOM04M000588 5.6e-10 67.4 52 51.9
Oropetium_20150105_15018 Oropetium thomaeum HOM04M000086 7.3e-10 67.0 54 48.1
TAE07056G002 Triticum aestivum HOM04M000588 7.3e-10 67.0 52 51.9
TAE20696G001 Triticum aestivum HOM04M000416 1.2e-09 66.2 52 51.9
Zm00001d052501 Zea mays HOM04M014391 1.2e-09 66.2 47 51.1
Bradi4g42915 Brachypodium distachyon HOM04M000086 1.6e-09 65.9 49 49.0
Potri.006G219000 Populus trichocarpa HOM04M000086 2.1e-09 65.5 48 50.0
Seita.7G317600 Setaria italica HOM04M000086 2.8e-09 65.1 49 55.1
Sobic.005G030200 Sorghum bicolor HOM04M000086 3.6e-09 64.7 48 52.1
LOC_Os12g04590 Oryza sativa ssp. japonica HOM04M000086 4.7e-09 64.3 51 49.0
Sobic.005G030266 Sorghum bicolor HOM04M000086 4.7e-09 64.3 48 52.1
LOC_Os12g04660 Oryza sativa ssp. japonica HOM04M000086 4.7e-09 64.3 51 49.0
Sobic.005G035850 Sorghum bicolor HOM04M000086 4.7e-09 64.3 62 50.0
LOC_Os11g04680 Oryza sativa ssp. japonica HOM04M000086 8.0e-09 63.5 55 47.3
OsR498G1220912600.01 Oryza sativa ssp. indica HOM04M000086 8.0e-09 63.5 51 49.0
TAE45596G001 Triticum aestivum HOM04M000086 1.0e-08 63.2 52 53.8
Zjn_sc00100.1.g00680.1.am.mk Zoysia japonica ssp. nagirizaki HOM04M000086 1.4e-08 62.8 63 44.4
LOC_Os11g04690 Oryza sativa ssp. japonica HOM04M000086 1.8e-08 62.4 49 46.9
LOC_Os12g04460 Oryza sativa ssp. japonica HOM04M000086 1.8e-08 62.4 49 46.9
EGU1136G1363 Elaeis guineensis HOM04M000086 1.8e-08 62.4 52 48.1
Seita.1G222900 Setaria italica HOM04M000588 2.3e-08 62.0 49 46.9
Sobic.008G035000 Sorghum bicolor HOM04M000086 2.3e-08 62.0 51 51.0
Seita.7G317800 Setaria italica HOM04M000588 2.3e-08 62.0 50 50.0
HVU0040G0860 Hordeum vulgare HOM04M000086 2.3e-08 62.0 54 50.0
AT3G13430 Arabidopsis thaliana HOM04M000086 2.3e-08 62.0 54 44.4
Sobic.005G055501 Sorghum bicolor HOM04M000086 2.3e-08 62.0 55 40.0
Potri.001G243300 Populus trichocarpa HOM04M000086 3.0e-08 61.6 56 41.1
Potri.005G090500 Populus trichocarpa HOM04M000086 3.0e-08 61.6 62 40.3
Cre16.g680117 Chlamydomonas reinhardtii HOM04M001134 3.0e-08 61.6 45 51.1
Solyc01g016410.2 Solanum lycopersicum HOM04M000086 4.0e-08 61.2 57 43.9
LOC_Os12g04650 Oryza sativa ssp. japonica HOM04M000086 4.0e-08 61.2 58 43.1
OsR498G1220914900.01 Oryza sativa ssp. indica HOM04M000086 4.0e-08 61.2 58 43.1
PEQU_27986 Phalaenopsis equestris HOM04M000086 4.0e-08 61.2 61 41.0
Seita.2G061300 Setaria italica HOM04M000086 5.2e-08 60.8 56 44.6
Seita.7G317900 Setaria italica HOM04M000086 5.2e-08 60.8 54 48.1
GSVIVG01019972001 Vitis vinifera HOM04M000086 6.8e-08 60.5 53 45.3
Zosma102g00250 Zostera marina HOM04M000086 6.8e-08 60.5 61 37.7
Zm00001d008237 Zea mays HOM04M000086 8.9e-08 60.1 61 42.6
Aco026401 Ananas comosus HOM04M000086 8.9e-08 60.1 63 41.3
Aco006254 Ananas comosus HOM04M000086 8.9e-08 60.1 63 41.3
Seita.8G035300 Setaria italica HOM04M000086 8.9e-08 60.1 56 44.6
Aco027763 Ananas comosus HOM04M000086 1.2e-07 59.7 47 55.3
Bradi4g26571 Brachypodium distachyon HOM04M000086 1.2e-07 59.7 61 45.9
Bradi4g44205 Brachypodium distachyon HOM04M000086 1.2e-07 59.7 58 43.1
TAE30521G002 Triticum aestivum HOM04M000086 1.5e-07 59.3 60 43.3
Zosma133g00620 Zostera marina HOM04M000086 1.5e-07 59.3 45 51.1
PEQU_13916 Phalaenopsis equestris HOM04M000086 1.5e-07 59.3 53 41.5
Seita.8G028300 Setaria italica HOM04M000086 1.5e-07 59.3 48 45.8
Zm00001d040445 Zea mays HOM04M000086 2.0e-07 58.9 61 42.6
Sobic.008G034800 Sorghum bicolor HOM04M000086 2.0e-07 58.9 49 51.0
Potri.010G201300 Populus trichocarpa HOM04M000086 2.0e-07 58.9 56 41.1
Spipo21G0034800 Spirodela polyrhiza HOM04M000086 2.0e-07 58.9 49 49.0
PH01001897G0340 Phyllostachys edulis HOM04M000086 2.0e-07 58.9 52 46.2
Aco029429 Ananas comosus HOM04M000086 2.6e-07 58.5 47 48.9
Aco026225 Ananas comosus HOM04M000086 2.6e-07 58.5 47 48.9
SMO365G0049 Selaginella moellendorffii HOM04M000086 2.6e-07 58.5 53 37.7
PAB00040760 Picea abies HOM04M000086 2.6e-07 58.5 54 42.6
ATR0068G051 Amborella trichopoda HOM04M000086 2.6e-07 58.5 61 44.3
Spipo23G0014700 Spirodela polyrhiza HOM04M000086 3.4e-07 58.2 65 38.5
Solyc03g121690.1 Solanum lycopersicum HOM04M000086 3.4e-07 58.2 49 51.0
MCO16G221 Micromonas commoda HOM04M000086 3.4e-07 58.2 48 45.8
TAE08069G001 Triticum aestivum HOM04M000086 3.4e-07 58.2 52 44.2
HVU0036G1651 Hordeum vulgare HOM04M000086 3.4e-07 58.2 64 40.6
Sobic.003G130700 Sorghum bicolor HOM04M000086 3.4e-07 58.2 61 41.0
MAC06G1836 Musa acuminata HOM04M000086 3.4e-07 58.2 49 49.0
TAE53046G001 Triticum aestivum HOM04M000086 4.4e-07 57.8 59 44.1
EGU2028G0590 Elaeis guineensis HOM04M000086 4.4e-07 57.8 56 39.3
OB12G12620 Oryza brachyantha HOM04M000086 4.4e-07 57.8 56 44.6
Zjn_sc00067.1.g00590.1.sm.mk Zoysia japonica ssp. nagirizaki HOM04M000086 4.4e-07 57.8 65 41.5
TAE28815G002 Triticum aestivum HOM04M000086 4.4e-07 57.8 52 44.2
AT1G22670 Arabidopsis thaliana HOM04M001134 4.4e-07 57.8 54 48.1
HVU0038G1501 Hordeum vulgare HOM04M000086 4.4e-07 57.8 52 44.2
TAE13189G002 Triticum aestivum HOM04M000086 5.7e-07 57.4 52 44.2
AT1G14200 Arabidopsis thaliana HOM04M000086 5.7e-07 57.4 55 36.4
Pp3c6_7790 Physcomitrella patens HOM04M001134 5.7e-07 57.4 51 45.1
TAE21800G001 Triticum aestivum HOM04M000086 5.7e-07 57.4 60 43.3
TAE36439G002 Triticum aestivum HOM04M000086 5.7e-07 57.4 64 40.6
TAE22881G001 Triticum aestivum HOM04M000086 5.7e-07 57.4 58 41.4
Potri.019G032500 Populus trichocarpa HOM04M000086 7.5e-07 57.0 51 43.1
LOC_Os01g74040 Oryza sativa ssp. japonica HOM04M000086 7.5e-07 57.0 53 39.6
OsR498G0102775500.01 Oryza sativa ssp. indica HOM04M000086 7.5e-07 57.0 53 39.6
Zm00001d023396 Zea mays HOM04M000012 7.5e-07 57.0 52 48.1
Oropetium_20150105_17049 Oropetium thomaeum HOM04M000086 7.5e-07 57.0 54 40.7
MAC03G1106 Musa acuminata HOM04M000086 7.5e-07 57.0 49 46.9
Oropetium_20150105_12763 Oropetium thomaeum HOM04M000086 7.5e-07 57.0 56 41.1
Seita.8G035500 Setaria italica HOM04M000086 7.5e-07 57.0 56 42.9
Zm00001d038528 Zea mays HOM04M000086 7.5e-07 57.0 57 38.6
ATR0564G158 Amborella trichopoda HOM04M000086 7.5e-07 57.0 62 38.7
OB03G45570 Oryza brachyantha HOM04M000086 9.8e-07 56.6 61 36.1
Mapoly0150s0014 Marchantia polymorpha HOM04M001134 9.8e-07 56.6 45 51.1
AT3G13228 Arabidopsis thaliana HOM04M000086 9.8e-07 56.6 52 40.4
Potri.017G102800 Populus trichocarpa HOM04M000086 9.8e-07 56.6 48 45.8
PAB00049453 Picea abies HOM04M000086 9.8e-07 56.6 54 37.0
Potri.009G034800 Populus trichocarpa HOM04M000086 9.8e-07 56.6 56 37.5
OsR498G0307259300.01 Oryza sativa ssp. indica HOM04M000086 1.3e-06 56.2 72 36.1
Seita.8G035700 Setaria italica HOM04M000086 1.3e-06 56.2 40 55.0
AT2G44330 Arabidopsis thaliana HOM04M000086 1.3e-06 56.2 54 42.6
OB08G29650 Oryza brachyantha HOM04M000012 1.3e-06 56.2 54 42.6
MAC05G1932 Musa acuminata HOM04M000086 1.3e-06 56.2 48 39.6
Pp3c3_13100 Physcomitrella patens HOM04M000086 1.3e-06 56.2 63 33.3
AT1G35625 Arabidopsis thaliana HOM04M001134 1.7e-06 55.8 53 41.5
Bradi4g43125 Brachypodium distachyon HOM04M000086 1.7e-06 55.8 61 39.3
Zjn_sc00014.1.g08250.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04M000086 1.7e-06 55.8 51 41.2
Zm00001d013005 Zea mays HOM04M000086 1.7e-06 55.8 51 41.2
Potri.010G168300 Populus trichocarpa HOM04M000086 1.7e-06 55.8 53 39.6
Seita.5G041700 Setaria italica HOM04M000086 1.7e-06 55.8 52 44.2
PH01000845G0550 Phyllostachys edulis HOM04M001134 1.7e-06 55.8 54 46.3
PH01003704G0280 Phyllostachys edulis HOM04M000086 1.7e-06 55.8 61 36.1
Bradi2g10520 Brachypodium distachyon HOM04M000086 1.7e-06 55.8 63 39.7
LOC_Os03g59760 Oryza sativa ssp. japonica HOM04M000086 1.7e-06 55.8 61 36.1
Sobic.001G040500 Sorghum bicolor HOM04M000086 2.2e-06 55.5 51 41.2
EGU0206G0907 Elaeis guineensis HOM04M001134 2.2e-06 55.5 52 40.4
AT1G71980 Arabidopsis thaliana HOM04M001134 2.2e-06 55.5 45 51.1
Spipo7G0042100 Spirodela polyrhiza HOM04M001134 2.2e-06 55.5 54 42.6
Zm00001d031741 Zea mays HOM04M000086 2.2e-06 55.5 64 39.1
HVU0037G0179 Hordeum vulgare HOM04M001134 2.9e-06 55.1 45 53.3
TAE02143G003 Triticum aestivum HOM04M001134 2.9e-06 55.1 45 53.3
Spipo1G0070500 Spirodela polyrhiza HOM04M000012 2.9e-06 55.1 47 44.7
MAC01G0457 Musa acuminata HOM04M000086 2.9e-06 55.1 51 39.2
SMO367G0751 Selaginella moellendorffii HOM04M001134 2.9e-06 55.1 53 45.3
PAB00055379 Picea abies HOM04M000086 2.9e-06 55.1 51 41.2
AT1G35630 Arabidopsis thaliana HOM04M001134 2.9e-06 55.1 53 41.5
Solyc04g009170.1 Solanum lycopersicum HOM04M000086 2.9e-06 55.1 48 41.7
Zjn_sc00007.1.g06130.1.am.mk Zoysia japonica ssp. nagirizaki HOM04M000086 2.9e-06 55.1 51 43.1
Bradi5g27480 Brachypodium distachyon HOM04M001134 2.9e-06 55.1 50 48.0
TAE54323G001 Triticum aestivum HOM04M001134 2.9e-06 55.1 45 53.3
TAE14248G004 Triticum aestivum HOM04M001134 2.9e-06 55.1 45 53.3
TAE29759G002 Triticum aestivum HOM04M000086 2.9e-06 55.1 64 39.1
EGU0881G0323 Elaeis guineensis HOM04M000012 2.9e-06 55.1 44 45.5
HVU0045G2584 Hordeum vulgare HOM04M001134 3.7e-06 54.7 45 53.3
Seita.9G040300 Setaria italica HOM04M000086 3.7e-06 54.7 51 41.2
TAE04136G002 Triticum aestivum HOM04M001134 3.7e-06 54.7 45 53.3
TAE12806G001 Triticum aestivum HOM04M001134 3.7e-06 54.7 45 53.3
Bradi3g13140 Brachypodium distachyon HOM04M001134 3.7e-06 54.7 45 53.3
Bradi1g04180 Brachypodium distachyon HOM04M000086 3.7e-06 54.7 61 34.4
PH01000712G0450 Phyllostachys edulis HOM04M002340 4.9e-06 54.3 54 42.6
SMO199G0066 Selaginella moellendorffii HOM04M001134 4.9e-06 54.3 45 48.9
TAE57693G001 Triticum aestivum HOM04M000086 4.9e-06 54.3 53 39.6
HVU0042G2038 Hordeum vulgare HOM04M007326 4.9e-06 54.3 51 39.2
EGU1685G0129 Elaeis guineensis HOM04M001134 4.9e-06 54.3 45 48.9
TAE47217G003 Triticum aestivum HOM04M000086 4.9e-06 54.3 53 39.6
Potri.008G058100 Populus trichocarpa HOM04M000086 4.9e-06 54.3 56 39.3
EGU1685G2404 Elaeis guineensis HOM04M001134 4.9e-06 54.3 50 44.0
PEQU_41587 Phalaenopsis equestris HOM04M000012 4.9e-06 54.3 49 46.9
Seita.4G051900 Setaria italica HOM04M007326 4.9e-06 54.3 49 42.9
Zjn_sc00106.1.g01590.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04M000086 6.4e-06 53.9 51 43.1
Zm00001d034998 Zea mays HOM04M001134 6.4e-06 53.9 54 44.4
Sobic.007G005300 Sorghum bicolor HOM04M001134 6.4e-06 53.9 45 51.1
Zm00001d052342 Zea mays HOM04M000012 6.4e-06 53.9 44 50.0
Zm00001d031058 Zea mays HOM04M001134 6.4e-06 53.9 45 51.1
Aco007680 Ananas comosus HOM04M000086 6.4e-06 53.9 53 37.7
OB03G15100 Oryza brachyantha HOM04M001134 6.4e-06 53.9 45 51.1
PEQU_12775 Phalaenopsis equestris HOM04M001134 6.4e-06 53.9 45 46.7
Sobic.008G166300 Sorghum bicolor HOM04M001134 6.4e-06 53.9 45 51.1
OsR498G0305289500.01 Oryza sativa ssp. indica HOM04M001134 6.4e-06 53.9 45 51.1
LOC_Os03g07130 Oryza sativa ssp. japonica HOM04M001134 6.4e-06 53.9 45 51.1
MAC01G0374 Musa acuminata HOM04M000086 6.4e-06 53.9 49 38.8
Aco015028 Ananas comosus HOM04M000588 6.4e-06 53.9 57 45.6
AT4G09560 Arabidopsis thaliana HOM04M001134 8.3e-06 53.5 54 42.6
OsR498G0204691300.01 Oryza sativa ssp. indica HOM04M000086 8.3e-06 53.5 53 39.6
Seita.6G005200 Setaria italica HOM04M001134 8.3e-06 53.5 45 51.1
Oropetium_20150105_15101 Oropetium thomaeum HOM04M000086 8.3e-06 53.5 47 46.8
Sobic.008G031800 Sorghum bicolor HOM04M000012 8.3e-06 53.5 48 52.1
Oropetium_20150105_13661 Oropetium thomaeum HOM04M001134 8.3e-06 53.5 45 48.9
Potri.017G038300 Populus trichocarpa HOM04M000086 8.3e-06 53.5 48 43.8
GSVIVG01035508001 Vitis vinifera HOM04M000086 8.3e-06 53.5 51 43.1
LOC_Os02g49550 Oryza sativa ssp. japonica HOM04M000086 8.3e-06 53.5 53 39.6
Sobic.005G036400 Sorghum bicolor HOM04M000012 8.3e-06 53.5 59 44.1
SMO361G0002 Selaginella moellendorffii HOM04M001134 8.3e-06 53.5 65 38.5
PEQU_40360 Phalaenopsis equestris HOM04M000086 8.3e-06 53.5 65 36.9
PEQU_02812 Phalaenopsis equestris HOM04M000086 8.3e-06 53.5 65 36.9
TAE44741G003 Triticum aestivum HOM04M000086 8.3e-06 53.5 65 40.0
Zm00001d044736 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d009237 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d035393 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d028508 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d002852 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d002655 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2
Zm00001d002608 Zea mays HOM04M000598 8.3e-06 53.5 52 46.2

Amborella trichopoda (2 genes)
Ananas comosus (7 genes)
Arabidopsis thaliana (9 genes)
Brachypodium distachyon (16 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (8 genes)
Hordeum vulgare (6 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (1 genes)
Musa acuminata (5 genes)
Oropetium thomaeum (7 genes)
Oryza brachyantha (8 genes)
Oryza sativa ssp. indica (9 genes)
Oryza sativa ssp. japonica (14 genes)
Phalaenopsis equestris (6 genes)
Phyllostachys edulis (4 genes)
Physcomitrella patens (2 genes)
Picea abies (3 genes)
Populus trichocarpa (10 genes)
Selaginella moellendorffii (4 genes)
Setaria italica (15 genes)
Solanum lycopersicum (3 genes)
Sorghum bicolor (15 genes)
Spirodela polyrhiza (4 genes)
Triticum aestivum (21 genes)
Vitis vinifera (2 genes)
Zea mays (19 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (5 genes)