Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
The genome of black cottonwood, Populus trichocarpa.

Info and Links

Source JGI v3.1
PLAZA identifier ptr
NCBI link Populus trichocarpa
Mitochondrion Not available
Chloroplast Not available

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Page 1 of 2148, showing 20 records out of 42950 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Gene family
Potri.T086001Potri.T086001.1115742117216-scaffold_99coding HOM04D004890
Potri.T086100Potri.T086100.4120870122267-scaffold_99coding HOM04D000046
Potri.T042650Potri.T042650.11382067+scaffold_99coding HOM04D001002
Potri.T085500Potri.T085500.22677330624-scaffold_99coding HOM04D000046
Potri.T085300Potri.T085300.11678718980+scaffold_99coding HOM04D005204
Potri.T085800Potri.T085800.1105362109444-scaffold_99coding HOM04D000046
Potri.T085900Potri.T085900.2113735114385+scaffold_99coding HOM04D005204
Potri.T085600Potri.T085600.16393064130+scaffold_99codingorphan gene
Potri.T085700Potri.T085700.18660788283-scaffold_99coding HOM04D000046
Potri.T085400Potri.T085400.11981521890-scaffold_99coding HOM04D004890
Potri.T178700Potri.T178700.220063223+scaffold_1833coding HOM04D000099
Potri.T085000Potri.T085000.2100492102498+scaffold_95coding HOM04D000041
Potri.T084000Potri.T084000.134904186+scaffold_95coding HOM04D002075
Potri.T084900Potri.T084900.19578998212+scaffold_95coding HOM04D000041
Potri.T084100Potri.T084100.21385715498+scaffold_95coding HOM04D012069
Potri.T084200Potri.T084200.11707119494+scaffold_95coding HOM04D000041
Potri.T084300Potri.T084300.42181324230+scaffold_95coding HOM04D000041
Potri.T085200Potri.T085200.1132043132456+scaffold_95coding HOM04D002579
Potri.T084600Potri.T084600.16068861338+scaffold_95coding HOM04D000041
Potri.T084400Potri.T084400.13897340285+scaffold_95coding HOM04D000041