Arabidopsis lyrata

Arabidopsis lyrata is, together with Arabidopsis thaliana, a member of the Arabidopsis genus. As the thaliana species is widely used as model organism within the green plants lineage, the sequencing of the lyrata species is expected to reveal important comparative genomic data with respect to genomic content, lifestyle differences, etc. The lyrate genome has approximately the same number of genes as the thaliana genome (33000 genes), but the genome itself is 50% larger, while the species only diverged approximately 5 million years ago.

Publication:
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Info and Links

Source JGI v2.1
PLAZA identifier aly
NCBI link Arabidopsis lyrata
Mitochondrion Not available
Chloroplast Not available

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Annotations

Page 1 of 1554, showing 20 records out of 31073 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Gene family
AL1G10010AL1G10010.t122503-scaffold_1coding HOM04D000588
AL1G10020AL1G10020.t135296123-scaffold_1coding HOM04D000588
AL1G10030AL1G10030.t174497610+scaffold_1coding HOM04D005194
AL1G10040AL1G10040.t1957610471+scaffold_1coding HOM04D003154
AL1G10050AL1G10050.t11065211872-scaffold_1coding HOM04D000927
AL1G10060AL1G10060.t11273913357-scaffold_1coding HOM04D007644
AL1G10070AL1G10070.t11372215363-scaffold_1coding HOM04D000284
AL1G10080AL1G10080.t11568519443-scaffold_1coding HOM04D006458
AL1G10090AL1G10090.t11971420589+scaffold_1coding HOM04D004140
AL1G10102AL1G10102.t12968131614+scaffold_1coding HOM04D003670
AL1G10104AL1G10104.t13308034752+scaffold_1coding HOM04D000034
AL1G10110AL1G10110.t13561039593-scaffold_1coding HOM04D004174
AL1G10120AL1G10120.t13996342531-scaffold_1coding HOM04D000216
AL1G10130AL1G10130.t14315046157-scaffold_1coding HOM04D006330
AL1G10140AL1G10140.t14640148614+scaffold_1coding HOM04D002843
AL1G10150AL1G10150.t14887549123+scaffold_1codingorphan gene
AL1G10160AL1G10160.t14957451000-scaffold_1coding HOM04D001828
AL1G10170AL1G10170.t15152651882-scaffold_1coding HOM04D006274
AL1G10180AL1G10180.t15597356447-scaffold_1coding HOM04D002882
AL1G10190AL1G10190.t15759957850+scaffold_1codingorphan gene