Anchorpoints

Gene id
AT1G69670
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G26830cullin 3 Cullin%2C putative%2C similar to Cullin homolog 3 (CUL-3) SP:Q13618%2C GI:3639052 from (Homo sapiens)%3B contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. cullin 3 (CUL3)%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Cullin homology (InterPro:IPR016158)%2C Cullin protein%2C neddylation domain (InterPro:IPR019559)%2C Cullin%2C N-terminal (InterPro:IPR001373)%2C Cullin repeat-like-containing domain (InterPro:IPR016159)%3B BEST Arabidopsis thaliana protein match is: cullin 3B (TAIR:AT1G69670.1)%3B Has 2310 Blast hits to 2269 proteins in 235 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 1034%3B Fungi - 455%3B Plants - 372%3B Viruses - 0%3B Other Eukaryotes - 440 (source: NCBI BLink).Chr1+View


Orthologs (inter-species colinear regions)

Actinidia chinensis

Gene id Description Chromosome Strand Multiplicon
Achn143931Cullin 3-like protein; contains IPR001373 (Cullin, N-terminal)Chr13-View
Achn293401Cullin 3-like protein; contains IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)Chr2-View

Amaranthus hypochondriacus

Gene id Description Chromosome Strand Multiplicon
AH005076Similar to CUL3A: Cullin-3A (Arabidopsis thaliana)Scaffold_3+View

Arachis ipaensis

Gene id Description Chromosome Strand Multiplicon
Araip.D5WHXUbiquitin ligase SCF complex subunit cullin n=1 Tax=Chlamydomonas reinhardtii RepID=A8I7H0_CHLREAraip.B03-View

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G38710No description available.scaffold_1+View
AL2G28840No description available.scaffold_2-View

Brassica oleracea

Gene id Description Chromosome Strand Multiplicon
Bo8g076450No description available.C8-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
Bv6_154150_rckdNo description available.Bvchr6.sca028+View

Capsicum annuum

Gene id Description Chromosome Strand Multiplicon
CAN.G206.144No description available.PGAv.1.6.scaffold206+View

Cicer arietinum

Gene id Description Chromosome Strand Multiplicon
Ca_18760.gNo description available.Ca2-View
Ca_10524.gNo description available.Ca2+View

Coffea canephora

Gene id Description Chromosome Strand Multiplicon
Cc11_g13120Cullin-3Achr11-View

Citrus clementina

Gene id Description Chromosome Strand Multiplicon
Ciclev10030804m.gNo description available.scaffold_4+View
Ciclev10011157m.gNo description available.scaffold_6-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
Cla017015.gUbiquitin ligase SCF complex subunit cullinChr10+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
MELO3C009879No description available.CM3.5_scaffold00011-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
Cpa.g.sc128.9No description available.supercontig_128+View

Chenopodium quinoa

Gene id Description Chromosome Strand Multiplicon
AUR62028794CUL3A: Cullin-3AC_Quinoa_Scaffold_2837+View
AUR62005763CUL3A: Cullin-3AC_Quinoa_Scaffold_1214-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
Carubv10008349m.gNo description available.scaffold_1+View
Carubv10022238m.gNo description available.scaffold_2-View

Cucumis sativus L.

Gene id Description Chromosome Strand Multiplicon
Cucsa.338990No description available.scaffold03356-View

Daucus carota

Gene id Description Chromosome Strand Multiplicon
DCAR_011135hypothetical proteinDCARv2_Chr3-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
Eucgr.B03431No description available.Chr02-View

Erythranthe guttata

Gene id Description Chromosome Strand Multiplicon
Migut.E00103No description available.scaffold_5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
Glyma.02G106500No description available.Chr02+View
Glyma.19G021600No description available.Chr19+View
Glyma.18G120300No description available.Chr18-View
Glyma.13G063600No description available.Chr13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
Gorai.006G020500No description available.Chr06-View

Hevea brasiliensis

Gene id Description Chromosome Strand Multiplicon
HBR1391G021No description available.NW_018746391.1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MDO.mRNA.g.511.72No description available.Backbone_511+View
MDO.mRNA.g.1221.15No description available.Backbone_1221-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
Manes.05G100200No description available.Chromosome05+View
Manes.01G186700No description available.Chromosome01-View

Nelumbo nucifera

Gene id Description Chromosome Strand Multiplicon
NNU_07252Cullin-3Amegascaffold_4-View

Petunia axillaris

Gene id Description Chromosome Strand Multiplicon
Peaxi162Scf00129g00233cullin 3Peaxi162Scf00129-View
Peaxi162Scf00026g03215cullin 3Peaxi162Scf00026+View

Pyrus bretschneideri

Gene id Description Chromosome Strand Multiplicon
Pbr039103.1.gNo description available.scaffold83.0-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
Prupe.3G269000No description available.Pp03-View
Prupe.1G272800No description available.Pp01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RCO.g.29813.000020cullin, putative29813+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
Solyc01g010820.2Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminalSL2.50ch01+View
Solyc02g087900.2Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminalSL2.50ch02+View

Schrenkiella parvula

Gene id Description Chromosome Strand Multiplicon
Tp1g21950ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)ch1-1-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
PGSC0003DMG400001321ATCUL3/ATCUL3A/CUL3/CUL3AST4.03ch02-View
PGSC0003DMG400006555ATCUL3/ATCUL3A/CUL3/CUL3AST4.03ch01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TCA.TCM_011755Cullin 3NC_023624.1+View

Tarenaya hassleriana

Gene id Description Chromosome Strand Multiplicon
THA.LOC104822917cullin-3B-likeNW_010966822.1-View
THA.LOC104822116cullin-3BNW_010966617.1+View

Vigna radiata var. radiata

Gene id Description Chromosome Strand Multiplicon
Vradi07g06000No description available.Vr07+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01011387001No description available.chr14+View
GSVIVG01020008001No description available.chr1+View

Ziziphus jujuba

Gene id Description Chromosome Strand Multiplicon
ZJU.LOC107429007cullin-3ANC_029688.1+View


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Gene id
Species
Description
Chromosome
Strand