Gene: evm.TU.AsparagusV1_08.3017.V1.1 (Asparagus officinalis)

Overview top

Gene Identifier
evm.TU.AsparagusV1_08.3017.V1.1
Transcript Identifier
evm.model.AsparagusV1_08.3017.V1.1
Gene Type
Coding gene
Location
AsparagusV1_08 : 117162266-117169931 : positive

Family Information

Homologous gene family
HOM04x5M003213
(83 genes in 38 species)
specific family
Orthologous gene family
ORTHO04x5M003836
(80 genes in 38 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
tidevm.model.AsparagusV1_08.3017.V1.1
pacid40528329

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0033683
ISO
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision AT2G41460
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT2G41460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0003677
IEA
InterProDNA binding
GO:0004519
IEA
InterProendonuclease activity
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT2G41460
GO:0004528
ISO
PLAZA Integrative Orthologyphosphodiesterase I activity AT2G41460
GO:0016791
ISO
PLAZA Integrative Orthologyphosphatase activity AT2G41460
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G41460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT2G41460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036691Endonuclease/exonuclease/phosphatase superfamily
IPR004808AP endonuclease 1
IPR005135Endonuclease/exonuclease/phosphatase
IPR020848AP endonuclease 1, conserved site
IPR020847AP endonuclease 1, binding site
IPR019825Legume lectin, beta chain, Mn/Ca-binding site
IPR003034SAP domain

Mapman id Description
14.5.10.3DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (ARP)