Gene: Solyc11g066370.1 (Solanum lycopersicum)

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Gene Identifier
Solyc11g066370.1
Transcript Identifier
Solyc11g066370.1.1
Gene Type
Coding gene
Location
SL2.50ch11 : 52125256-52138334 : negative

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase

Identifiers

Type Value
idSolyc11g066370.1.ITAG2.4
pacid36153521
tidSolyc11g066370.1.1.ITAG2.4
tidSolyc11g066370.1.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0000012
ISO
PLAZA Integrative Orthologysingle strand break repair AT1G08130
GO:0006260
ISO
PLAZA Integrative OrthologyDNA replication AT1G08130
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT1G08130
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT1G08130

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G08130
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G08130
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G08130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012310DNA ligase, ATP-dependent, central
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
13.2.4.3Cell cycle organisation.DNA replication.maturation.DNA ligase (LIG1)
14.5.5DNA damage response.base excision repair (BER).DNA ligase (LIG1)