Gene: Solyc05g005080.2 (Solanum lycopersicum)

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Gene Identifier
Solyc05g005080.2
Transcript Identifier
Solyc05g005080.2.1
Gene Type
Coding gene
Location
SL2.50ch05 : 81637-83955 : positive

Family Information

Homologous gene family
HOM04x5M000109
(1152 genes in 38 species)
specific family
Orthologous gene family
ORTHO04x5M001127
(173 genes in 37 species)
specific family

Descriptions

Description
Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9

Identifiers

Type Value
idSolyc05g005080.2.ITAG2.4
pacid36144480
tidSolyc05g005080.2.1.ITAG2.4
tidSolyc05g005080.2.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009414
IEP
Gene Ontologyresponse to water deprivation1
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0030244
ISO
PLAZA Integrative Orthologycellulose biosynthetic process AT5G49720
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT5G49720
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT5G49720
GO:0009624
ISO
PLAZA Integrative Orthologyresponse to nematode AT4G24260
GO:0009735
ISO
PLAZA Integrative Orthologyresponse to cytokinin AT5G49720
GO:0043622
ISO
PLAZA Integrative Orthologycortical microtubule organization AT5G49720
GO:0042538
ISO
PLAZA Integrative Orthologyhyperosmotic salinity response AT5G49720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT5G49720
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT5G49720
GO:0005769
ISO
PLAZA Integrative Orthologyearly endosome AT5G49720
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G49720
GO:0009504
ISO
PLAZA Integrative Orthologycell plate AT5G49720
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT5G49720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012341Six-hairpin glycosidase-like superfamily
IPR001701Glycoside hydrolase family 9
IPR018221Glycoside hydrolase family 9, His active site
IPR033126Glycosyl hydrolases family 9, Asp/Glu active sites
IPR008928Six-hairpin glycosidase superfamily

Mapman id Description
21.1.1.1.2Cell wall organisation.cellulose.cellulose synthase complex (CSC).CSC components.associated endo-1,4-beta-glucanase component KOR