Gene: Pp3c1_30500 (Physcomitrium patens)

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Gene Identifier
Pp3c1_30500
Transcript Identifier
Pp3c1_30500V3.1
Gene Type
Coding gene
Location
Chr01 : 21663008-21666796 : positive

Family Information

Homologous gene family
HOM04x5M000034
(2497 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M000013
(2457 genes in 39 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
namePp3c1_30500V3.1
pacid32968044
tidPAC:32968044

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0010262
ISO
PLAZA Integrative Orthologysomatic embryogenesis AT5G13790
GO:0010220
ISO
PLAZA Integrative Orthologypositive regulation of vernalization response AT4G24540
GO:0010582
ISO
PLAZA Integrative Orthologyfloral meristem determinacy AT2G22540
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G13790
GO:0060560
ISO
PLAZA Integrative Orthologydevelopmental growth involved in morphogenesis AT5G60910
GO:0048438
ISO
PLAZA Integrative Orthologyfloral whorl development AT2G22540
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G61120
GO:0048833
ISO
PLAZA Integrative Orthologyspecification of floral organ number AT1G24260
GO:0048437
ISO
PLAZA Integrative Orthologyfloral organ development AT2G45650
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G09960
GO:0045487
ISO
PLAZA Integrative Orthologygibberellin catabolic process AT5G13790
GO:0009835
ISO
PLAZA Integrative Orthologyfruit ripening Solyc07g055920.2
GO:0009911
ISO
PLAZA Integrative Orthologypositive regulation of flower development AT2G45650
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G65080
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G71692
GO:0048441
ISO
PLAZA Integrative Orthologypetal development AT2G03710
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT4G18960
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT5G62165
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT2G22540
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT1G24260
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT1G69120
GO:0030308
ISO
PLAZA Integrative Orthologynegative regulation of cell growth AT1G31140
GO:0048443
ISO
PLAZA Integrative Orthologystamen development AT4G18960
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT4G18960
GO:0048442
ISO
PLAZA Integrative Orthologysepal development AT2G03710
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT4G09960
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT3G61120
GO:0001708
ISO
PLAZA Integrative Orthologycell fate specification AT1G24260
GO:0016117
ISO
PLAZA Integrative Orthologycarotenoid biosynthetic process Solyc05g012020.2
GO:0080060
ISO
PLAZA Integrative Orthologyintegument development AT4G09960
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc07g055920.2
GO:0010077
ISO
PLAZA Integrative Orthologymaintenance of inflorescence meristem identity AT2G45660
GO:0010076
ISO
PLAZA Integrative Orthologymaintenance of floral meristem identity AT2G22540
GO:2000692
ISO
PLAZA Integrative Orthologynegative regulation of seed maturation AT5G13790
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT5G62165
GO:0080187
ISO
PLAZA Integrative Orthologyfloral organ senescence AT5G62165
GO:1903338
ISO
PLAZA Integrative Orthologyregulation of cell wall organization or biogenesis AT4G09960
GO:0007584
ISO
PLAZA Integrative Orthologyresponse to nutrient AT2G14210
GO:0048527
ISO
PLAZA Integrative Orthologylateral root development AT2G14210
GO:0009838
ISO
PLAZA Integrative Orthologyabscission AT5G62165
GO:0010629
ISO
PLAZA Integrative Orthologynegative regulation of gene expression AT5G13790
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc05g012020.2
GO:0048577
ISO
PLAZA Integrative Orthologynegative regulation of short-day photoperiodism, flowering AT3G57390
GO:0071365
ISO
PLAZA Integrative Orthologycellular response to auxin stimulus AT5G13790
GO:0048497
ISO
PLAZA Integrative Orthologymaintenance of floral organ identity AT4G18960
GO:0048574
ISO
PLAZA Integrative Orthologylong-day photoperiodism, flowering AT3G57230
GO:0048530
ISO
PLAZA Integrative Orthologyfruit morphogenesis AT1G31140
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT3G61120
GO:0071249
ISO
PLAZA Integrative Orthologycellular response to nitrate AT2G14210
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G71692
GO:0010227
ISO
PLAZA Integrative Orthologyfloral organ abscission AT5G13790
GO:0010221
ISO
PLAZA Integrative Orthologynegative regulation of vernalization response AT5G65050
GO:0010223
ISO
PLAZA Integrative Orthologysecondary shoot formation AT3G30260
GO:0008360
ISO
PLAZA Integrative Orthologyregulation of cell shape AT5G23260
GO:0010440
ISO
PLAZA Integrative Orthologystomatal lineage progression AT3G57230
GO:0010082
ISO
PLAZA Integrative Orthologyregulation of root meristem growth AT4G11880
GO:0080155
ISO
PLAZA Integrative Orthologyregulation of double fertilization forming a zygote and endosperm AT4G09960
GO:0060867
ISO
PLAZA Integrative Orthologyfruit abscission AT5G13790
GO:0048578
ISO
PLAZA Integrative Orthologypositive regulation of long-day photoperiodism, flowering AT2G22630
GO:0060862
ISO
PLAZA Integrative Orthologynegative regulation of floral organ abscission AT5G13790
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT5G10140
GO:0009933
ISO
PLAZA Integrative Orthologymeristem structural organization AT1G69120
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT2G45660
GO:0051302
ISO
PLAZA Integrative Orthologyregulation of cell division AT4G09960
GO:0045595
ISO
PLAZA Integrative Orthologyregulation of cell differentiation AT5G23260
GO:0048587
ISO
PLAZA Integrative Orthologyregulation of short-day photoperiodism, flowering AT5G65080
GO:2000012
ISO
PLAZA Integrative Orthologyregulation of auxin polar transport AT4G11880
GO:0010311
ISO
PLAZA Integrative Orthologylateral root formation AT3G30260
GO:0010093
ISO
PLAZA Integrative Orthologyspecification of floral organ identity AT1G24260
GO:0009266
ISO
PLAZA Integrative Orthologyresponse to temperature stimulus AT2G22540
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G45660
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT4G22950
GO:2000029
ISO
PLAZA Integrative Orthologyregulation of proanthocyanidin biosynthetic process AT5G23260
GO:0010167
ISO
PLAZA Integrative Orthologyresponse to nitrate AT2G14210
GO:0010364
ISO
PLAZA Integrative Orthologyregulation of ethylene biosynthetic process Solyc05g012020.2
GO:2000028
ISO
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT5G65080
GO:0010048
ISO
PLAZA Integrative Orthologyvernalization response AT5G65080
GO:0010047
ISO
PLAZA Integrative Orthologyfruit dehiscence AT5G13790

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000977
IEA
InterProRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0046982
ISO
PLAZA Integrative Orthologyprotein heterodimerization activity AT1G69120
GO:0000900
ISO
PLAZA Integrative Orthologytranslation repressor activity, mRNA regulatory element binding AT2G22540
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G62165
GO:0044212
ISO
PLAZA Integrative Orthologytranscription regulatory region DNA binding AT4G11880
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT2G22540
GO:0001047
ISO
PLAZA Integrative Orthologycore promoter binding Solyc07g055920.2
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT3G57230
GO:0008134
ISO
PLAZA Integrative Orthologytranscription factor binding AT3G57230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G65070
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G45660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR033896MADS MEF2-like
IPR036879Transcription factor, MADS-box superfamily
IPR002487Transcription factor, K-box
IPR002100Transcription factor, MADS-box

Mapman id Description
15.5.14RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)