Gene: Oropetium_20150105_11565 (Oropetium thomaeum)

Overview top

Gene Identifier
Oropetium_20150105_11565
Transcript Identifier
Oropetium_20150105_11565A
Gene Type
Coding gene
Location
Oropetium_genomic_20141112_026 : 542598-552527 : positive

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
Similar to adl1: DNA ligase 3 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))

Identifiers

Type Value
idOropetium_20150105_11565.v1.0
pacid36015093
tidOropetium_20150105_11565A.v1.0
tidOropetium_20150105_11565A

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT1G66730
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G66730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR011084DNA repair metallo-beta-lactamase
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site
IPR015940Ubiquitin-associated domain
IPR001279Metallo-beta-lactamase
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
14.4.4DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6)