Gene: Ma04_g22700 (Musa acuminata)

Overview top

Gene Identifier
Ma04_g22700
Transcript Identifier
Ma04_t22700.1
Gene Type
Coding gene
Location
chr04 : 24964814-24985334 : negative

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
DNA ligase 1-like, transcript variant X2
note
DNA ligase 1-like, transcript variant X2

Identifiers

Type Value
tidMa04_t22700.1
old_locus_tagGSMUA_Achr1G02920_001,GSMUA_Achr1G02930_001,gene271

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0000012
ISO
PLAZA Integrative Orthologysingle strand break repair AT1G08130
GO:0006260
ISO
PLAZA Integrative OrthologyDNA replication AT1G08130
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT1G08130
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT1G08130

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G08130
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G08130
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G08130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012310DNA ligase, ATP-dependent, central
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
13.2.4.3Cell cycle organisation.DNA replication.maturation.DNA ligase (LIG1)
14.5.5DNA damage response.base excision repair (BER).DNA ligase (LIG1)