Gene: Ma04_g00670 (Musa acuminata)

Overview top

Gene Identifier
Ma04_g00670
Transcript Identifier
Ma04_t00670.1
Gene Type
Coding gene
Location
chr04 : 645631-667297 : negative

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
DNA ligase 1, transcript variant X1
note
DNA ligase 1, transcript variant X1

Identifiers

Type Value
tidMa04_t00670.1
old_locus_tagGSMUA_Achr4G00720_001,gene7860

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT1G66730
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G66730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012310DNA ligase, ATP-dependent, central
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR011084DNA repair metallo-beta-lactamase
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR001279Metallo-beta-lactamase
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
14.4.4DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6)