Gene: LOC_Os12g34850 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os12g34850
Transcript Identifier
LOC_Os12g34850.1
Gene Type
Coding gene
Location
Chr12 : 21210704-21214624 : negative

Family Information

Homologous gene family
HOM04x5M001172
(189 genes in 35 species)
specific family

Descriptions

Description
Fibronectin type III domain containing protein, expressed

Identifiers

Type Value
idLOC_Os12g34850.MSUv7.0
pacid33151477
tidLOC_Os12g34850.1.MSUv7.0
tidLOC_Os12g34850.1
RAPOs12g0533500

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT3G24440
GO:0031062
ISO
PLAZA Integrative Orthologypositive regulation of histone methylation AT3G24440
GO:0061087
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K27 methylation AT3G24440
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G24440
GO:0048572
ISO
PLAZA Integrative Orthologyshort-day photoperiodism AT3G24440
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT3G24440
GO:0048575
ISO
PLAZA Integrative Orthologyshort-day photoperiodism, flowering AT3G24440
GO:0051571
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K4 methylation AT3G24440
GO:0016571
ISO
PLAZA Integrative Orthologyhistone methylation AT3G24440
GO:0010048
ISO
PLAZA Integrative Orthologyvernalization response AT3G24440

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G24440
GO:0005677
ISO
PLAZA Integrative Orthologychromatin silencing complex AT3G24440
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G24440

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain
IPR036116Fibronectin type III superfamily

Mapman id Description
12.3.3.1.2.2Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)