Gene: LOC_Os07g12910 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os07g12910
Transcript Identifier
LOC_Os07g12910.1
Gene Type
Coding gene
Location
Chr7 : 7414923-7417988 : negative

Family Information

Homologous gene family
HOM04x5M000346
(504 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M000341
(396 genes in 39 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
PHD finger protein, putative, expressed

Identifiers

Type Value
idLOC_Os07g12910.MSUv7.0
pacid33114886
tidLOC_Os07g12910.1.MSUv7.0
tidLOC_Os07g12910.1
RAPOs07g0233300

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
InterProhistone binding
GO:0035064
ISO
PLAZA Integrative Orthologymethylated histone binding AT5G05610
GO:0044212
ISO
PLAZA Integrative Orthologytranscription regulatory region DNA binding AT5G05610
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT5G05610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G11200
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G11200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR021998Alfin
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
15.5.8RNA biosynthesis.transcriptional regulation.transcription factor (Alfin)