Gene: Aco007249 (Ananas comosus)

Overview top

Gene Identifier
Aco007249
Transcript Identifier
Aco007249.1
Gene Type
Coding gene
Location
LG23 : 2707803-2711835 : negative

Family Information

Homologous gene family
HOM04x5M003213
(83 genes in 38 species)
specific family
Orthologous gene family
ORTHO04x5M003836
(80 genes in 38 species)
specific family

Descriptions

Description
DNA-apurinic or apyrimidinic site lyase

Identifiers

Type Value
idAco007249.v3
pacid33047851
tidAco007249.1.v3
tidAco007249.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0033683
ISO
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision AT2G41460
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT2G41460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0003677
IEA
InterProDNA binding
GO:0004519
IEA
InterProendonuclease activity
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT2G41460
GO:0004528
ISO
PLAZA Integrative Orthologyphosphodiesterase I activity AT2G41460
GO:0016791
ISO
PLAZA Integrative Orthologyphosphatase activity AT2G41460
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G41460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT2G41460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036361SAP domain superfamily
IPR036691Endonuclease/exonuclease/phosphatase superfamily
IPR004808AP endonuclease 1
IPR005135Endonuclease/exonuclease/phosphatase
IPR020848AP endonuclease 1, conserved site
IPR003034SAP domain

Mapman id Description
14.5.10.3DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (ARP)