Gene: AT5G15540 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G15540
Transcript Identifier
AT5G15540.1
Gene Type
Coding gene
Location
Chr5 : 5047887-5057411 : negative

Family Information

Homologous gene family
HOM04x5M003226
(83 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M004921
(66 genes in 39 species)
specific family

Descriptions

Description
PHD finger family protein
Curated Summary
Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.
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Identifiers

Type Value
AliasATSCC2,ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2,SCC2,SISTER-CHROMATID COHESION 2
full_nameEMBRYO DEFECTIVE 2773
Dbxrefgene:2180941,UniProt:A5HEI1
symbolEMB2773
tidAT5G15540.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010468
IEA
InterProregulation of gene expression
GO:0051301
IEA
Gene Ontologycell division1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2 3
GO:0034508
IMP
Gene Ontologycentromere complex assembly4 5
GO:0051177
IMP
Gene Ontologymeiotic sister chromatid cohesion4 5
GO:0007062
IMP
Gene Ontologysister chromatid cohesion6 7
GO:0007064
IBA
Gene Ontologymitotic sister chromatid cohesion8
GO:0071733
IBA
Gene Ontologytranscriptional activation by promoter-enhancer looping8
GO:0070550
IBA
Gene OntologyrDNA condensation8
GO:0034087
IBA
Gene Ontologyestablishment of mitotic sister chromatid cohesion8
GO:1990414
IBA
Gene Ontologyreplication-born double-strand break repair via sister chromatid exchange8
GO:1905406
IBA
Gene Ontologypositive regulation of mitotic cohesin loading8
GO:0007076
IBA
Gene Ontologymitotic chromosome condensation8
GO:0006302
IBA
Gene Ontologydouble-strand break repair8
GO:0071169
IBA
Gene Ontologyestablishment of protein localization to chromatin8

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IBA
Gene Ontologychromatin binding8
GO:0003682
IEA
InterProchromatin binding
GO:0046872
IEA
Gene Ontologymetal ion binding1
GO:0005515
IPI
Gene Ontologyprotein binding9 10

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000775
IEA
Gene Ontologychromosome, centromeric region11
GO:0005634
ISM, IBA
Gene Ontologynucleus8 12
GO:0000790
IBA
Gene Ontologynuclear chromatin8
GO:0000785
IBA
Gene Ontologychromatin8
GO:0000228
IBA
Gene Ontologynuclear chromosome8
GO:0090694
IBA
Gene OntologyScc2-Scc4 cohesin loading complex8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011989Armadillo-like helical
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR033031SCC2/Nipped-B family
IPR026003HEAT repeat associated with sister chromatid cohesion protein
IPR024986Sister chromatid cohesion C-terminal domain
IPR019786Zinc finger, PHD-type, conserved site
IPR019787Zinc finger, PHD-finger
IPR001965Zinc finger, PHD-type
IPR001841Zinc finger, RING-type
IPR011011Zinc finger, FYVE/PHD-type
IPR016024Armadillo-type fold

Mapman id Description
13.3.5.2.1Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.adherin (SCC2)