Gene: AT3G20475 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G20475
Transcript Identifier
AT3G20475.3
Gene Type
Coding gene
Location
Chr3 : 7143546-7150532 : positive

Family Information

Homologous gene family
HOM04x5M004098
(67 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M005058
(65 genes in 39 species)
specific family

Descriptions

Description
MUTS-homologue 5
Curated Summary
Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.
Show more...

Identifiers

Type Value
AliasATMSH5,MUTS-HOMOLOGUE 5
symbolMSH5
tidAT3G20475.3

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
ISS, IBA
Gene Ontologymismatch repair1 2
GO:0006298
IEA
InterPromismatch repair
GO:0007131
IMP
IBA
Gene Ontologyreciprocal meiotic recombination1 3 4
GO:0051026
IMP
Gene Ontologychiasma assembly3 4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
ISS, IBA
Gene OntologyATP binding1 2
GO:0005524
IEA
InterProATP binding
GO:0030983
IBA
Gene Ontologymismatched DNA binding1
GO:0030983
IEA
InterPromismatched DNA binding
GO:0003684
ISS
Gene Ontologydamaged DNA binding2
GO:0008094
IBA
Gene OntologyDNA-dependent ATPase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus5
GO:0000794
IDA
Gene Ontologycondensed nuclear chromosome3 4
GO:0032300
IBA
Gene Ontologymismatch repair complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000432DNA mismatch repair protein MutS, C-terminal
IPR007696DNA mismatch repair protein MutS, core
IPR011184DNA mismatch repair Msh2-type
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR036187DNA mismatch repair protein MutS, core domain superfamily

Mapman id Description
13.3.6.5.1.2.2Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5