Gene: AT3G14080 (Arabidopsis thaliana)

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Gene Identifier
AT3G14080
Transcript Identifier
AT3G14080.1
Gene Type
Coding gene
Location
Chr3 : 4667717-4668989 : positive

Family Information

Homologous gene family
HOM04x5M003771
(72 genes in 38 species)
specific family
Orthologous gene family
ORTHO04x5M004421
(71 genes in 38 species)
specific family

Descriptions

Description
Small nuclear ribonucleoprotein family protein
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Identifiers

Type Value
full_nameSM-like 1B
Dbxrefgene:2087521,UniProt:Q8LFL8
symbolLSM1B
tidAT3G14080.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0016070
IGI
IBA
Gene OntologyRNA metabolic process1 2 3
GO:0006397
IGI
Gene OntologymRNA processing4 5
GO:0009414
IMP
Gene Ontologyresponse to water deprivation4 5
GO:0009631
IMP
Gene Ontologycold acclimation4 5
GO:0042538
IMP
Gene Ontologyhyperosmotic salinity response4 5
GO:0000290
IBA
Gene Ontologydeadenylation-dependent decapping of nuclear-transcribed mRNA1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2 3
GO:0003723
IDA
IBA
Gene OntologyRNA binding1 4 5
GO:0000339
IBA
Gene OntologyRNA cap binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IDA
IBA
IEA
Gene OntologyP-body1 2 3 6
GO:0005634
ISS, ISM
Gene Ontologynucleus7 8
GO:0005732
ISS
Gene Ontologysmall nucleolar ribonucleoprotein complex7
GO:1990726
IBA
Gene OntologyLsm1-7-Pat1 complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034104Sm-like protein Lsm1
IPR001163LSM domain, eukaryotic/archaea-type
IPR010920LSM domain superfamily

Mapman id Description
16.4.3.1RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm1