Monocots PLAZA 4.5 gene overview : AT2G39990

Gene: AT2G39990 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G39990
Transcript Identifier: AT2G39990.1
Gene Type: Coding gene
Location: Chr2 : 16698332-16699929 : negative

Family Information

Homologous gene family: HOM04x5M003832
(71 genes in 39 species)
specific family
Orthologous gene family: ORTHO04x5M005390
(63 genes in 39 species)
specific family

Descriptions

Description: eukaryotic translation initiation factor 2

Curated Summary: translation initiation factor eIF2 p47 subunit homolog

Identifiers

Type	Value
Alias	AteIF3f,Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F,eIF3F,eukaryotic translation initiation factor 3 subunit F
Dbxref	PMID:14617066,PMID:17432890,gene:2061205,UniProt:O04202
symbol	EIF2
tid	AT2G39990.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006413	ISS, IBA	Gene Ontology	translational initiation	1 2
GO:0006413	IEA	InterPro	translational initiation
GO:0009744	IMP	Gene Ontology	response to sucrose	3 4
GO:0009793	IMP	Gene Ontology	embryo development ending in seed dormancy	3 4
GO:0009846	IMP	Gene Ontology	pollen germination	3 4

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003743	ISS, IBA	Gene Ontology	translation initiation factor activity	1 2
GO:0003743	IEA	InterPro	translation initiation factor activity
GO:0031369	IBA	Gene Ontology	translation initiation factor binding	1
GO:0031369	IEA	InterPro	translation initiation factor binding
GO:0005515	IPI	Gene Ontology	protein binding	3 4
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005852	ISS	Gene Ontology	eukaryotic translation initiation factor 3 complex	2
GO:0005852	IEA	InterPro	eukaryotic translation initiation factor 3 complex
GO:0009507	ISM	Gene Ontology	chloroplast	5
GO:0005634	IDA	Gene Ontology	nucleus	6 7
GO:0005737	IDA	Gene Ontology	cytoplasm	8 9
GO:0016020	IDA	Gene Ontology	membrane	10 11
GO:0005829	IDA	Gene Ontology	cytosol	12 13
GO:0071541	IBA	Gene Ontology	eukaryotic translation initiation factor 3 complex, eIF3m	1

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027531	Eukaryotic translation initiation factor 3 subunit F
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain
IPR024969	Rpn11/EIF3F, C-terminal
IPR037518	MPN domain

Mapman id	Description
17.4.1.3.6	Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF3 mRNA-to-PIC binding complex.component eIF3f