Gene: AT1G66730 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G66730
Transcript Identifier
AT1G66730.1
Gene Type
Coding gene
Location
Chr1 : 24884991-24891823 : positive

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
DNA LIGASE 6
Curated Summary
Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.
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Identifiers

Type Value
AliasAtLIG6,DNA LIGASE 6
Dbxrefgene:2033373,UniProt:F4HPZ9
symbolLIG6
tidAT1G66730.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IMP
ISS
Gene OntologyDNA repair1 2 3
GO:0006281
IEA
InterProDNA repair
GO:0006310
ISS
Gene OntologyDNA recombination1
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0006260
ISS
Gene OntologyDNA replication1
GO:0009845
IMP
Gene Ontologyseed germination2 3
GO:0006303
IMP
Gene Ontologydouble-strand break repair via nonhomologous end joining4 5
GO:0006273
IBA
Gene Ontologylagging strand elongation6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
ISS, IBA
Gene OntologyDNA ligase (ATP) activity1 6
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
ISS
Gene OntologyATP binding1
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus6 7
GO:0005737
IBA
Gene Ontologycytoplasm6
GO:0005739
IBA
Gene Ontologymitochondrion6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012310DNA ligase, ATP-dependent, central
IPR011084DNA repair metallo-beta-lactamase
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
14.4.4DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6)