Gene: AT1G49250 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G49250
Transcript Identifier
AT1G49250.1
Gene Type
Coding gene
Location
Chr1 : 18220533-18224256 : positive

Family Information

Homologous gene family
HOM04x5M001747
(137 genes in 39 species)
specific family
Orthologous gene family
ORTHO04x5M002018
(123 genes in 39 species)
specific family

Descriptions

Description
ATP-dependent DNA ligase
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Identifiers

Type Value
Dbxrefgene:2010206,UniProt:F4I1P7
tidAT1G49250.1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0006273
IBA
Gene Ontologylagging strand elongation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
ISS, IBA
Gene OntologyDNA ligase (ATP) activity1 2
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
ISS
Gene OntologyATP binding2
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus1 3
GO:0005739
IBA
Gene Ontologymitochondrion1
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR036599DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR012310DNA ligase, ATP-dependent, central
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR000977DNA ligase, ATP-dependent

Mapman id Description
13.2.4.3Cell cycle organisation.DNA replication.maturation.DNA ligase (LIG1)
14.5.5DNA damage response.base excision repair (BER).DNA ligase (LIG1)