Gene: ASH_gene14619 (Apostasia shenzhenica)

Overview top

Gene Identifier
ASH_gene14619
Transcript Identifier
ASH_rna14619
Gene Type
Coding gene
Location
KZ452001.1 : 6759295-6780835 : positive

Family Information

Homologous gene family
HOM04x5M004601
(62 genes in 38 species)
specific family
Orthologous gene family
ORTHO04x5M005443
(62 genes in 39 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
tidrna14619
pidPKA52881.1
nameLIG4
idgene14619

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0051103
IEA
InterProDNA ligation involved in DNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0010165
ISO
PLAZA Integrative Orthologyresponse to X-ray AT5G57160
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT5G57160
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT5G57160
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT5G57160
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT5G57160
GO:0006302
ISO
PLAZA Integrative Orthologydouble-strand break repair AT5G57160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003909
IEA
InterProDNA ligase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G57160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G57160
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT5G57160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001357BRCT domain
IPR036420BRCT domain superfamily
IPR029710DNA ligase 4
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold

Mapman id Description
14.4.2.1DNA damage response.nonhomologous end-joining (NHEJ) repair.LIG4-XRCC4 ligase complex.DNA ligase component LIG4