Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
TraesCS4B02G097500No description available.chr4B+View
TraesCS5A02G113500No description available.chr5A-View
TraesCS5D02G128700No description available.chr5D+View
TraesCS4D02G093900No description available.chr4D+View
TraesCS4A02G218700No description available.chr4A+View


Orthologs (inter-species colinear regions)

Ananas comosus

Gene id Description Chromosome Strand Multiplicon
Aco003273SWI/SNF complex subunit SWI3CLG17+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G21700SWITCH/sucrose nonfermenting 3C a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A%2C the other two members of the SWI3 family. Homologous to yeast SWI3 %26 RSC8%2C components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). SWITCH/sucrose nonfermenting 3C (SWI3C)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: chromatin remodeling%3B LOCATED IN: SWI/SNF complex%2C chromatin remodeling complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C SWIRM (InterPro:IPR007526)%2C SANT%2C eukarya (InterPro:IPR017884)%3B BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3)%3B Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0%3B Bacteria - 43%3B Metazoa - 1892%3B Fungi - 779%3B Plants - 380%3B Viruses - 2%3B Other Eukaryotes - 1607 (source: NCBI BLink).Chr1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
Bradi4g41230MYB-related transcription factorBd4-View

Calamus simplicifolius

Gene id Description Chromosome Strand Multiplicon
CALSI_Maker00044137No description available.scaffold8+View
CALSI_Maker00011393No description available.scaffold157+View

Cenchrus americanus

Gene id Description Chromosome Strand Multiplicon
Pgl_GLEAN_10038213No description available.chr1+View
Pgl_GLEAN_10018451No description available.chr4-View

Elaeis guineensis

Gene id Description Chromosome Strand Multiplicon
p5.00_sc00045_p0139No description available.EG5.1_Chr9+View
p5.00_sc00012_p0207No description available.EG5.1_Chr2+View

Hordeum vulgare

Gene id Description Chromosome Strand Multiplicon
HORVU5Hr1G037060No description available.chr5H+View

Lolium perenne

Gene id Description Chromosome Strand Multiplicon
LP013480No description available.scaffold_193_ref0030883-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
Ma08_g30600SWI/SNF complex subunit SWI3C-like, transcript variant X2chr08+View

Miscanthus sinensis

Gene id Description Chromosome Strand Multiplicon
Misin14G059400No description available.Chr14+View
Misin15G061800No description available.Chr15-View

Oryza brachyantha

Gene id Description Chromosome Strand Multiplicon
OB12G14500Uncharacterized protein12+View
OB11G14200Uncharacterized protein11+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
LOC_Os12g07730SWIRM domain containing protein, expressedChr12+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OsR498G1119529300.01protein_codingChr11+View
OsR498G1221039900.01protein_codingChr12+View

Oropetium thomaeum

Gene id Description Chromosome Strand Multiplicon
Oropetium_20150105_10811Similar to SWI3C: SWI/SNF complex subunit SWI3C (Arabidopsis thaliana)Oropetium_genomic_20141112_013-View

Phalaenopsis equestris

Gene id Description Chromosome Strand Multiplicon
PEQU_25097No description available.Scaffold001241-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
Potri.002G080600No description available.Chr02-View
Potri.005G180800similar to SWIRM domain-containing protein; DNA-binding family protein; similar to SWI/SNF complex 170 KDa subunit (Homo sapiens) gi|1549241|gb|AAC50694|; similar to SWI3-like gene; [ ortholog of At1g21700,]Chr05+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
Sobic.008G057000similar to Putative uncharacterized proteinChr08+View
Sobic.005G064000No description available.Chr05+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
Seita.8G060100No description available.scaffold_8+View
Seita.7G284300No description available.scaffold_7-View

Spirodela polyrhiza

Gene id Description Chromosome Strand Multiplicon
Spipo9G0043900SWI/SNF complex subunit SMARCC2pseudo9+View

Saccharum spontaneum

Gene id Description Chromosome Strand Multiplicon
Sspon.07G0019500-1ANo description available.Chr7A+View
Sspon.05G0017940-1ANo description available.Chr5A-View
Sspon.07G0019500-2BNo description available.Chr7B+View
Sspon.07G0019490-3DNo description available.Chr7D-View
Sspon.05G0017940-3DNo description available.Chr5D-View
Sspon.05G0017940-2CNo description available.Chr5C-View
Sspon.07G0019490-2CNo description available.Chr7C-View

Triticum turgidum

Gene id Description Chromosome Strand Multiplicon
TRITD4Av1G173000SWI/SNF complex subunit SWI3Cchr4A+View
TRITD5Av1G079080SWI/SNF complex subunit SWI3Cchr5A-View
TRITD5Bv1G068430SWI/SNF complex subunit SWI3Cchr5B-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
GSVIVG01008831001No description available.chr18-View

Zoysia japonica ssp. nagirizaki

Gene id Description Chromosome Strand Multiplicon
Zjn_sc00097.1.g00600.1.sm.mkhcNo description available.Zjn_sc00097.1-View

Zea mays B73

Gene id Description Chromosome Strand Multiplicon
Zm00001d041847Switch/sucrose nonfermenting 3C3-View

Zea mays PH207

Gene id Description Chromosome Strand Multiplicon
Zm00008a012539No description available.chr03-View
Zm00008a018180No description available.chr04+View

Zostera marina

Gene id Description Chromosome Strand Multiplicon
Zosma161g00830SWI/SNF complex subunit SWI3Cscaffold_161-View


Download

Gene id
Species
Description
Chromosome
Strand