Functional clusters   top

Information

Type
GO term
Identifier
GO:0016567
Description
protein ubiquitination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodaAmTr_v1.0_scaffold001291CH_atr_75570.0000000439276
Amborella trichopodaAmTr_v1.0_scaffold001292CH_atr_75570.0000000439276
Arabidopsis thalianaChr41CH_ath_479440.000447088
Arabidopsis thalianaChr42CH_ath_479440.000447088
Arabidopsis thalianaChr43CH_ath_647440.00096782
Arabidopsis thalianaChr44CH_ath_647440.00096782
Brachypodium distachyonBd31CH_bdi_240330.000955891
Brachypodium distachyonBd51CH_bdi_2194100.000588438
Brachypodium distachyonBd32CH_bdi_240330.000955891
Brachypodium distachyonBd52CH_bdi_2194100.000588438
Calamus simplicifoliusscaffold7211CH_calsi_905110.000002144
Calamus simplicifoliusscaffold7212CH_calsi_905110.000002144
Cenchrus americanuschr31CH_cam_132450.000013482
Cenchrus americanuschr71CH_cam_266330.00094378
Cenchrus americanuschr32CH_cam_132450.000013482
Cenchrus americanuschr72CH_cam_266330.00094378
Cenchrus americanuschr33CH_cam_274450.00017386
Cenchrus americanuschr34CH_cam_274450.00017386
Elaeis guineensisEG5.1_Chr21CH_egu_146490.000428868
Elaeis guineensisEG5.1_Chr31CH_egu_190330.000984753
Elaeis guineensisEG5.1_Chr22CH_egu_146490.000428868
Elaeis guineensisEG5.1_Chr32CH_egu_190330.000984753
Hordeum vulgarechr2H1CH_hvu_239490.000166032
Hordeum vulgarechr2H2CH_hvu_239490.000166032
Miscanthus sinensisChr021CH_msi_320470.000183058
Miscanthus sinensisChr031CH_msi_189440.00000526826
Miscanthus sinensisChr041CH_msi_321470.000183058
Miscanthus sinensisChr091CH_msi_190440.00000526826
Miscanthus sinensisChr121CH_msi_80680.00000000130905
Miscanthus sinensisChr022CH_msi_320470.000183058
Miscanthus sinensisChr032CH_msi_189440.00000526826
Miscanthus sinensisChr042CH_msi_321470.000183058
Miscanthus sinensisChr092CH_msi_190440.00000526826
Miscanthus sinensisChr122CH_msi_80680.00000000130905
Miscanthus sinensisChr033CH_msi_348440.000086555
Miscanthus sinensisChr043CH_msi_467450.000430666
Miscanthus sinensisChr093CH_msi_349440.000086555
Miscanthus sinensisChr123CH_msi_150680.000000088131
Miscanthus sinensisChr034CH_msi_348440.000086555
Miscanthus sinensisChr044CH_msi_467450.000430666
Miscanthus sinensisChr094CH_msi_349440.000086555
Miscanthus sinensisChr124CH_msi_150680.000000088131
Oryza brachyantha111CH_obr_212330.000789145
Oryza brachyantha91CH_obr_213330.000789145
Oryza brachyantha112CH_obr_212330.000789145
Oryza brachyantha92CH_obr_213330.000789145
Oryza sativa ssp. indicaChr21CH_osaindica_291330.00079461
Oryza sativa ssp. indicaChr41CH_osaindica_135440.00000213472
Oryza sativa ssp. indicaChr91CH_osaindica_136440.00000213472
Oryza sativa ssp. indicaChr22CH_osaindica_291330.00079461
Oryza sativa ssp. indicaChr42CH_osaindica_135440.00000213472
Oryza sativa ssp. indicaChr92CH_osaindica_136440.00000213472
Oryza sativa ssp. indicaChr43CH_osaindica_212440.0000371702
Oryza sativa ssp. indicaChr44CH_osaindica_212440.0000371702
Oryza sativa ssp. japonicaChr41CH_osa_198450.0000149581
Oryza sativa ssp. japonicaChr91CH_osa_261470.000104226
Oryza sativa ssp. japonicaChr42CH_osa_198450.0000149581
Oryza sativa ssp. japonicaChr92CH_osa_261470.000104226
Oryza sativa ssp. japonicaChr43CH_osa_353450.000214476
Oryza sativa ssp. japonicaChr44CH_osa_353450.000214476
Saccharum spontaneumChr4B1CH_ssp_639470.000397083
Saccharum spontaneumChr5A1CH_ssp_143690.0000000108956
Saccharum spontaneumChr4B2CH_ssp_639470.000397083
Saccharum spontaneumChr5A2CH_ssp_143690.0000000108956
Saccharum spontaneumChr2C3CH_ssp_1023450.00082742
Saccharum spontaneumChr5A3CH_ssp_283690.000000605528
Saccharum spontaneumChr2C4CH_ssp_1023450.00082742
Saccharum spontaneumChr5A4CH_ssp_283690.000000605528
Setaria italicascaffold_71CH_sit_236460.0000671727
Setaria italicascaffold_72CH_sit_236460.0000671727
Setaria italicascaffold_23CH_sit_470460.000921779
Setaria italicascaffold_73CH_sit_469460.000921779
Setaria italicascaffold_24CH_sit_470460.000921779
Setaria italicascaffold_74CH_sit_469460.000921779
Solanum lycopersicumSL2.50ch011CH_sly_407330.000829248
Solanum lycopersicumSL2.50ch011CH_sly_127560.0000000391379
Solanum lycopersicumSL2.50ch012CH_sly_127560.0000000391379
Solanum lycopersicumSL2.50ch012CH_sly_407330.000829248
Sorghum bicolorChr051CH_sbi_155440.00000349771
Sorghum bicolorChr061CH_sbi_202460.0000522019
Sorghum bicolorChr052CH_sbi_155440.00000349771
Sorghum bicolorChr062CH_sbi_202460.0000522019
Sorghum bicolorChr053CH_sbi_279440.0000607617
Sorghum bicolorChr063CH_sbi_420460.000902028
Sorghum bicolorChr054CH_sbi_279440.0000607617
Sorghum bicolorChr064CH_sbi_420460.000902028
Triticum aestivumchr2A1CH_tae_2297100.0000000000638517
Triticum aestivumchr2B1CH_tae_214790.0000000000192118
Triticum aestivumchr2D1CH_tae_1109120.00000000000000129959
Triticum aestivumchr5B1CH_tae_691440.0000142101
Triticum aestivumchr5D1CH_tae_690440.0000142101
Triticum aestivumchr2A2CH_tae_2297100.0000000000638517
Triticum aestivumchr2B2CH_tae_214790.0000000000192118
Triticum aestivumchr2D2CH_tae_1109120.00000000000000129959
Triticum aestivumchr5B2CH_tae_691440.0000142101
Triticum aestivumchr5D2CH_tae_690440.0000142101
Triticum aestivumchr2A3CH_tae_4207100.00000000653883
Triticum aestivumchr2B3CH_tae_374790.0000000019729
Triticum aestivumchr2D3CH_tae_2079120.000000000000506625
Triticum aestivumchr2A4CH_tae_4207100.00000000653883
Triticum aestivumchr2B4CH_tae_374790.0000000019729
Triticum aestivumchr2D4CH_tae_2079120.000000000000506625
Triticum turgidumchr2A1CH_ttu_3110141.03166e-17
Triticum turgidumchr2B1CH_ttu_55890.00000000000000881396
Triticum turgidumchr5B1CH_ttu_312440.00000822979
Triticum turgidumchr2A2CH_ttu_3110141.03166e-17
Triticum turgidumchr2B2CH_ttu_55890.00000000000000881396
Triticum turgidumchr5B2CH_ttu_312440.00000822979
Triticum turgidumchr2A3CH_ttu_5910140.00000000000000874425
Triticum turgidumchr2B3CH_ttu_92890.00000000000191627
Triticum turgidumchr5B3CH_ttu_500440.000119311
Triticum turgidumchr2A4CH_ttu_5910140.00000000000000874425
Triticum turgidumchr2B4CH_ttu_92890.00000000000191627
Triticum turgidumchr5B4CH_ttu_500440.000119311

Available child term results

GO term Description Number of clusters
GO:0010390histone monoubiquitination32
GO:0031396regulation of protein ubiquitination4
GO:0070534protein K63-linked ubiquitination8
GO:1904666regulation of ubiquitin protein ligase activity4
GO:1904667negative regulation of ubiquitin protein ligase activity18
GO:1904668positive regulation of ubiquitin protein ligase activity20

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
3GOAll GO data.230800.001X
2GOPrimary GO data only.230800.001V
4GOAll GO data.230800.001V
6InterProNo filter applied.230800.001V
1GOPrimary GO data only.230800.001X
5InterProNo filter applied.230800.001X