Functional clusters   top


GO term
cytoplasmic vesicle

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza sativa ssp. japonicaChr111CH_osa_8630610.000000000278615
Oryza sativa ssp. japonicaChr101CH_osa_24318360.0000509206
Oryza sativa ssp. japonicaChr101CH_osa_24414220.0000513114
Oryza sativa ssp. japonicaChr21CH_osa_320880.000379014
Oryza sativa ssp. japonicaChr114CH_osa_10030610.000000000344293
Oryza sativa ssp. japonicaChr104CH_osa_29414220.0000569476
Oryza sativa ssp. japonicaChr104CH_osa_29518360.0000578549
Oryza sativa ssp. japonicaChr14CH_osa_39013210.000366666
Oryza sativa ssp. japonicaChr24CH_osa_394880.00040373
Phyllostachys edulisPH010000784CH_ped_43340.000471667
Oryza sativa ssp. japonicaChr113CH_osa_10030610.000000000344293
Oryza sativa ssp. japonicaChr103CH_osa_29414220.0000569476
Oryza sativa ssp. japonicaChr103CH_osa_29518360.0000578549
Oryza sativa ssp. japonicaChr13CH_osa_39013210.000366666
Oryza sativa ssp. japonicaChr23CH_osa_394880.00040373
Phyllostachys edulisPH010000783CH_ped_43340.000471667
Oryza sativa ssp. japonicaChr112CH_osa_8630610.000000000278615
Oryza sativa ssp. japonicaChr102CH_osa_24318360.0000509206
Oryza sativa ssp. japonicaChr102CH_osa_24414220.0000513114
Oryza sativa ssp. japonicaChr22CH_osa_320880.000379014

Available child term results

Ontology identifier Description Number of clusters
GO:0000814 ESCRT II complex 4
GO:0000938 GARP complex 14
GO:0005769 early endosome 2
GO:0005798 Golgi-associated vesicle 2
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 4
GO:0030126 COPI vesicle coat 10
GO:0030127 COPII vesicle coat 8
GO:0030136 clathrin-coated vesicle 2
GO:0031303 integral component of endosome membrane 2
GO:0031313 extrinsic component of endosome membrane 4
GO:0032585 multivesicular body membrane 2
GO:0035658 Mon1-Ccz1 complex 4
GO:0036452 ESCRT complex 4
GO:1990457 pexophagosome 2
GO:1990745 EARP complex 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 GO Primary GO data only. 2 30 80 0.001 X
2 GO Primary GO data only. 2 30 80 0.001 V
3 GO All GO data. 2 30 80 0.001 X
4 GO All GO data. 2 30 80 0.001 V
5 InterPro No filter applied. 2 30 80 0.001 X
6 InterPro No filter applied. 2 30 80 0.001 V