Functional clusters   top

Information

Type
GO term
Identifier
GO:0005576
Description
extracellular region

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalisAsparagusV1_041CH_aof_120330.000677821
Arabidopsis thalianaChr31CH_ath_12516350.0000000672153
Arabidopsis thalianaChr41CH_ath_22220710.00000414758
Arabidopsis thalianaChr51CH_ath_33315440.0000521116
Arabidopsis thalianaChr11CH_ath_42114410.000187417
Amborella trichopodaAmTr_v1.0_scaffold000191CH_atr_62550.00000000481282
Hordeum vulgarechr4H1CH_hvu_538170.000000000493565
Musa acuminatachr021CH_mac_92440.0000189256
Marchantia polymorphascaffold_971CH_mpo_138110.00000000000334947
Miscanthus sinensisChr081CH_msi_261440.0000451399
Oryza brachyantha71CH_obr_218120.000000000000818435
Oryza brachyantha61CH_obr_76570.000000640448
Oryza brachyantha101CH_obr_1435130.0000384992
Oryza sativa ssp. japonicaChr71CH_osa_320285.86151e-36
Oryza sativa ssp. japonicaChr61CH_osa_638120.00000000000758804
Oryza sativa ssp. japonicaChr21CH_osa_271450.000132704
Oryza sativa ssp. indicaChr71CH_osaindica_2210180.00000000000000635988
Oryza sativa ssp. indicaChr61CH_osaindica_438130.00000000000953532
Oropetium thomaeumOropetium_genomic_20141112_0811CH_oth_19560.00000010175
Populus trichocarpaChr091CH_ptr_1047110.000000000569916
Sorghum bicolorChr041CH_sbi_196440.0000368736
Setaria italicascaffold_61CH_sit_538110.000000000013093
Setaria italicascaffold_11CH_sit_218440.0000547041
Solanum lycopersicumSL2.50ch011CH_sly_149560.000000237426
Spirodela polyrhizapseudo21CH_spo_119126.26032e-17
Saccharum spontaneumChr2C1CH_ssp_113790.00000000111344
Saccharum spontaneumChr4D1CH_ssp_691450.000644107
Triticum aestivumchr5B1CH_tae_3913132.90583e-23
Triticum aestivumchr4D1CH_tae_6166100.00000427044
Triticum aestivumchr4B1CH_tae_797570.0000570824
Triticum aestivumchr5A1CH_tae_882580.000151257
Triticum aestivumchr5D1CH_tae_982440.000362648
Triticum aestivumchr5A1CH_tae_983440.000362648
Triticum turgidumchr5B1CH_ttu_2211115.75891e-20
Triticum turgidumchr4B1CH_ttu_289560.00000465077
Triticum turgidumchr5A1CH_ttu_391440.000119311
Vitis viniferachr31CH_vvi_818180.000000000175897
Zea mays B7351CH_zma_136450.0000972284
Zea mays B104scaffold5.30701CH_zma-b104_19470.0000373181
Apostasia shenzhenicaKZ452023.14CH_ash_7890.00000000392307
Arabidopsis thalianaChr44CH_ath_14115270.0000000140543
Arabidopsis thalianaChr34CH_ath_18016350.000000114694
Arabidopsis thalianaChr44CH_ath_30720710.00000772788
Arabidopsis thalianaChr54CH_ath_43415440.0000844374
Amborella trichopodaAmTr_v1.0_scaffold000194CH_atr_163550.0000341172
Hordeum vulgarechr4H4CH_hvu_1229200.000000364166
Musa acuminatachr024CH_mac_170550.000217509
Oryza brachyantha64CH_obr_2596120.00044621
Oryza sativa ssp. japonicaChr64CH_osa_1239150.00000000990731
Oryza sativa ssp. indicaChr64CH_osaindica_899160.000000013549
Populus trichocarpaChr194CH_ptr_37612620.0000955117
Setaria italicascaffold_94CH_sit_4717420.0000000000000667817
Setaria italicascaffold_64CH_sit_1499150.0000000801749
Solanum lycopersicumSL2.50ch014CH_sly_449560.000406621
Apostasia shenzhenicaKZ452023.13CH_ash_7890.00000000392307
Arabidopsis thalianaChr43CH_ath_14115270.0000000140543
Arabidopsis thalianaChr33CH_ath_18016350.000000114694
Arabidopsis thalianaChr43CH_ath_30720710.00000772788
Arabidopsis thalianaChr53CH_ath_43415440.0000844374
Amborella trichopodaAmTr_v1.0_scaffold000193CH_atr_163550.0000341172
Hordeum vulgarechr4H3CH_hvu_1229200.000000364166
Musa acuminatachr023CH_mac_170550.000217509
Oryza brachyantha63CH_obr_2596120.00044621
Oryza sativa ssp. japonicaChr63CH_osa_1239150.00000000990731
Oryza sativa ssp. indicaChr63CH_osaindica_899160.000000013549
Populus trichocarpaChr193CH_ptr_37612620.0000955117
Setaria italicascaffold_93CH_sit_4717420.0000000000000667817
Setaria italicascaffold_63CH_sit_1499150.0000000801749
Solanum lycopersicumSL2.50ch013CH_sly_449560.000406621
Asparagus officinalisAsparagusV1_042CH_aof_120330.000677821
Arabidopsis thalianaChr32CH_ath_12516350.0000000672153
Arabidopsis thalianaChr42CH_ath_22220710.00000414758
Arabidopsis thalianaChr52CH_ath_33315440.0000521116
Arabidopsis thalianaChr12CH_ath_42114410.000187417
Amborella trichopodaAmTr_v1.0_scaffold000192CH_atr_62550.00000000481282
Hordeum vulgarechr4H2CH_hvu_538170.000000000493565
Musa acuminatachr022CH_mac_92440.0000189256
Marchantia polymorphascaffold_972CH_mpo_138110.00000000000334947
Miscanthus sinensisChr082CH_msi_261440.0000451399
Oryza brachyantha72CH_obr_218120.000000000000818435
Oryza brachyantha62CH_obr_76570.000000640448
Oryza brachyantha102CH_obr_1435130.0000384992
Oryza sativa ssp. japonicaChr72CH_osa_320285.86151e-36
Oryza sativa ssp. japonicaChr62CH_osa_638120.00000000000758804
Oryza sativa ssp. japonicaChr22CH_osa_271450.000132704
Oryza sativa ssp. indicaChr72CH_osaindica_2210180.00000000000000635988
Oryza sativa ssp. indicaChr62CH_osaindica_438130.00000000000953532
Oropetium thomaeumOropetium_genomic_20141112_0812CH_oth_19560.00000010175
Populus trichocarpaChr092CH_ptr_1047110.000000000569916
Sorghum bicolorChr042CH_sbi_196440.0000368736
Setaria italicascaffold_62CH_sit_538110.000000000013093
Setaria italicascaffold_12CH_sit_218440.0000547041
Solanum lycopersicumSL2.50ch012CH_sly_149560.000000237426
Spirodela polyrhizapseudo22CH_spo_119126.26032e-17
Saccharum spontaneumChr2C2CH_ssp_113790.00000000111344
Saccharum spontaneumChr4D2CH_ssp_691450.000644107
Triticum aestivumchr5B2CH_tae_3913132.90583e-23
Triticum aestivumchr4D2CH_tae_6166100.00000427044
Triticum aestivumchr4B2CH_tae_797570.0000570824
Triticum aestivumchr5A2CH_tae_882580.000151257
Triticum aestivumchr5D2CH_tae_982440.000362648
Triticum aestivumchr5A2CH_tae_983440.000362648
Triticum turgidumchr5B2CH_ttu_2211115.75891e-20
Triticum turgidumchr4B2CH_ttu_289560.00000465077
Triticum turgidumchr5A2CH_ttu_391440.000119311
Vitis viniferachr32CH_vvi_818180.000000000175897
Zea mays B7352CH_zma_136450.0000972284
Zea mays B104scaffold5.30702CH_zma-b104_19470.0000373181

Available child term results

Ontology identifier Description Number of clusters
GO:0005615 extracellular space 104
GO:0031012 extracellular matrix 18
GO:0048046 apoplast 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 GO Primary GO data only. 2 30 80 0.001 X
2 GO Primary GO data only. 2 30 80 0.001 V
3 GO All GO data. 2 30 80 0.001 X
4 GO All GO data. 2 30 80 0.001 V
5 InterPro No filter applied. 2 30 80 0.001 X
6 InterPro No filter applied. 2 30 80 0.001 V