Multiplicon view: 86 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
86 20 34 16 75

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG07 Aco004876 Aco004889
Ananas comosus LG09 Aco008517 Aco008530
Ananas comosus LG15 Aco003843 Aco003834
Asparagus officinalis AsparagusV1_08 evm.TU.AsparagusV1_08.1375.V1.1 evm.TU.AsparagusV1_08.1340.V1.1
Brachypodium distachyon Bd1 Bradi1g08000 Bradi1g07930
Elaeis guineensis EG5.1_Chr1 p5.00_sc00118_p0021 p5.00_sc00118_p0001
Elaeis guineensis EG5.1_Chr6 p5.00_sc00151_p0009 p5.00_sc00151_p0050
Hordeum vulgare chr5H HORVU5Hr1G096780 HORVU5Hr1G096920
Miscanthus sinensis Chr01 Misin01G063800 Misin01G065100
Miscanthus sinensis Chr02 Misin02G061800 Misin02G060400
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07630 Oropetium_20150105_07638
Oryza brachyantha 3 OB03G41800 OB03G41920
Oryza brachyantha 7 OB07G26570 OB07G26420
Oryza sativa ssp. indica Chr3 OsR498G0307080500.01 OsR498G0307084100.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g55130 LOC_Os03g55230
Oryza sativa ssp. japonica Chr7 LOC_Os07g40620 LOC_Os07g40300
Populus trichocarpa Chr17 Potri.017G088500 Potri.017G094900
Setaria italica scaffold_2 Seita.2G377300 Seita.2G375500
Setaria italica scaffold_9 Seita.9G085000 Seita.9G082900
Solanum lycopersicum SL2.50ch05 Solyc05g012700.2 Solyc05g012200.2
Sorghum bicolor Chr01 Sobic.001G083400 Sobic.001G082200
Sorghum bicolor Chr02 Sobic.002G363200 Sobic.002G361600
Spirodela polyrhiza pseudo2 Spipo2G0092200 Spipo2G0093900
Triticum aestivum chr5A TraesCS5A02G396400 TraesCS5A02G397700
Triticum aestivum chr5B TraesCS5B02G401300 TraesCS5B02G402700
Triticum aestivum chr5D TraesCS5D02G405900 TraesCS5D02G407200
Triticum turgidum chr2A TRITD2Av1G062030 TRITD2Av1G062770
Triticum turgidum chr5A TRITD5Av1G206030 TRITD5Av1G206530
Triticum turgidum chr5B TRITD5Bv1G202160 TRITD5Bv1G202760
Zea mays B73 1 Zm00001d034080 Zm00001d034098
Zea mays B73 5 Zm00001d013241 Zm00001d013226
Zea mays B73 7 Zm00001d022043 Zm00001d022022
Zea mays PH207 chr01 Zm00008a005243 Zm00008a005253
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04880.1.sm.mkhc Zjn_sc00014.1.g05010.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
85 20 33 10 68

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
87 21 35 15 79
92 20 35 11 81
93 21 35 11 80

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
87824 2 2 24 94
95907 2 2 21 106
100181 2 2 19 79
104129 2 2 18 59
127356 2 2 14 55
127423 2 2 14 57
127669 2 2 14 61
129411 2 2 14 87
135412 2 2 13 56
135413 2 2 13 58
135595 2 2 13 56
135956 2 2 13 67
145173 2 2 12 50
145526 2 2 12 60
145895 2 2 12 58
146011 2 2 12 58
158013 2 2 11 55
158313 2 2 11 48
159609 2 2 11 56
163381 2 2 11 107
175282 2 2 10 58
178794 2 2 10 88
193643 2 2 9 48
198526 2 2 9 82
199301 2 2 9 107
220198 2 2 8 55
342400 2 2 5 21